Fix file collison when not using adapaterlist on single-end data

jfy133 · jfy133 · commit f10980b62c99 · 2021-06-09T20:57:37.000+02:00
diff --git a/main.nf b/main.nf
@@ -229,7 +229,7 @@ if( params.bt2_index && params.mapper == 'bowtie2' ){
 
 // Adapter removal adapter-list setup
 if ( !params.clip_adapters_list ) {
-    ch_adapterlist = Channel.fromPath("$projectDir/assets/nf-core_eager_dummy.txt")
+    ch_adapterlist = Channel.fromPath("$projectDir/assets/nf-core_eager_dummy2.txt")
 } else {
     ch_adapterlist = Channel.fromPath(params.clip_adapters_list, checkIfExists: true)
 }

Original file line number	Diff line number	Diff line change
`@@ -229,7 +229,7 @@ if( params.bt2_index && params.mapper == 'bowtie2' ){`
`229`	`229`
`230`	`230`	`// Adapter removal adapter-list setup`
`231`	`231`	`if ( !params.clip_adapters_list ) {`
`232`		`- ch_adapterlist = Channel.fromPath("$projectDir/assets/nf-core_eager_dummy.txt")`
	`232`	`+ ch_adapterlist = Channel.fromPath("$projectDir/assets/nf-core_eager_dummy2.txt")`
`233`	`233`	`} else {`
`234`	`234`	`ch_adapterlist = Channel.fromPath(params.clip_adapters_list, checkIfExists: true)`
`235`	`235`	`}`