# nf-core/eager v2.0.1

## Run Name: happy_ardinghelli

#### nf-core/eager execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: `127`.

The full error message was:

    Error executing process > 'output_documentation'

    Caused by:
      Process `output_documentation` terminated with an error exit status (127)

    Command executed:

      markdown_to_html.r output.md results_description.html

    Command exit status:
      127

    Command output:
      (empty)

    Command error:
      /projects1/users/fellows/nextflow/eager2/my_test/work/conda/nf-core-eager-2.0.1-21a7e9f4e1525113a0a8843adce834c8/lib/R/bin/exec/R: error while loading shared libraries: libiconv.so.2: cannot open shared object file: No such file or directory

    Work dir:
      /projects1/users/fellows/nextflow/eager2/my_test/work/07/cc9e073b614a503fafe1f46f3ad364

    Tip: when you have fixed the problem you can continue the execution appending to the nextflow command line the option `-resume`

The workflow was completed at Fri Nov 02 14:49:57 CET 2018 (duration: 9m 52s)

The command used to launch the workflow was as follows:

    nextflow run nf-core/eager --reads EXB015.A1701/*_R{1,2}*fastq.gz --pairedEnd --fasta ~References/hg19_MT.fasta -profile standard,conda --max_cpus 4 --max_memory 16G -r dev

### Pipeline Configuration:

Pipeline Name |
    nf-core/eager
Pipeline Version |
    2.0.1
Run Name |
    happy_ardinghelli
Reads |
    EXB015.A1701/*_R{1,2}*fastq.gz
Fasta Ref |
    ~References/hg19_MT.fasta
Data Type |
    Paired-End
Max Memory |
    16G
Max CPUs |
    4
Max Time |
    10d
Output dir |
    ./results
Working dir |
    /projects1/users/fellows/nextflow/eager2/my_test/work
Container Engine |
    null
Current home |
    /projects1/clusterhomes/fellows
Current user |
    fellows
Current path |
    /projects1/users/fellows/nextflow/eager2/my_test
Script dir |
    /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager
Config Profile |
    standard,conda
Date Started |
    Fri Nov 02 14:40:05 CET 2018
Date Completed |
    Fri Nov 02 14:49:57 CET 2018
Pipeline script file path |
    /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager/main.nf
Pipeline script hash ID |
    b830dc186a77957a7b56fd9b3a6233ea
Pipeline repository Git URL |
    https://github.com/nf-core/eager.git
Pipeline repository Git Commit |
    3778a787393393586e86d9299bd0959d00f952e0
Pipeline Git branch/tag |
    dev
Nextflow Version |
    0.32.0
Nextflow Build |
    4897
Nextflow Compile Timestamp |
    27-09-2018 10:17 UTC

nf-core/eager

https://github.com/nf-core/eager