The exit status of the task that caused the workflow execution to fail was: 127.
The full error message was:
Error executing process > 'output_documentation' Caused by: Process `output_documentation` terminated with an error exit status (127) Command executed: markdown_to_html.r output.md results_description.html Command exit status: 127 Command output: (empty) Command error: /projects1/users/fellows/nextflow/eager2/my_test/work/conda/nf-core-eager-2.0.1-21a7e9f4e1525113a0a8843adce834c8/lib/R/bin/exec/R: error while loading shared libraries: libiconv.so.2: cannot open shared object file: No such file or directory Work dir: /projects1/users/fellows/nextflow/eager2/my_test/work/07/cc9e073b614a503fafe1f46f3ad364 Tip: when you have fixed the problem you can continue the execution appending to the nextflow command line the option `-resume`
The workflow was completed at Fri Nov 02 14:49:57 CET 2018 (duration: 9m 52s)
The command used to launch the workflow was as follows:
nextflow run nf-core/eager --reads EXB015.A1701/*_R{1,2}*fastq.gz --pairedEnd --fasta ~References/hg19_MT.fasta -profile standard,conda --max_cpus 4 --max_memory 16G -r dev
| Pipeline Name | nf-core/eager |
|---|---|
| Pipeline Version | 2.0.1 |
| Run Name | happy_ardinghelli |
| Reads | EXB015.A1701/*_R{1,2}*fastq.gz |
| Fasta Ref | ~References/hg19_MT.fasta |
| Data Type | Paired-End |
| Max Memory | 16G |
| Max CPUs | 4 |
| Max Time | 10d |
| Output dir | ./results |
| Working dir | /projects1/users/fellows/nextflow/eager2/my_test/work |
| Container Engine | null |
| Current home | /projects1/clusterhomes/fellows |
| Current user | fellows |
| Current path | /projects1/users/fellows/nextflow/eager2/my_test |
| Script dir | /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager |
| Config Profile | standard,conda |
| Date Started | Fri Nov 02 14:40:05 CET 2018 |
| Date Completed | Fri Nov 02 14:49:57 CET 2018 |
| Pipeline script file path | /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager/main.nf |
| Pipeline script hash ID | b830dc186a77957a7b56fd9b3a6233ea |
| Pipeline repository Git URL | https://github.com/nf-core/eager.git |
| Pipeline repository Git Commit | 3778a787393393586e86d9299bd0959d00f952e0 |
| Pipeline Git branch/tag | dev |
| Nextflow Version | 0.32.0 |
| Nextflow Build | 4897 |
| Nextflow Compile Timestamp | 27-09-2018 10:17 UTC |
nf-core/eager