Nextflow workflow report

[happy_ardinghelli]

Error executing process > 'output_documentation'

Caused by:
  Process `output_documentation` terminated with an error exit status (127)

Command executed:

  markdown_to_html.r output.md results_description.html

Command exit status:
  127

Command output:
  (empty)

Command error:
  /projects1/users/fellows/nextflow/eager2/my_test/work/conda/nf-core-eager-2.0.1-21a7e9f4e1525113a0a8843adce834c8/lib/R/bin/exec/R: error while loading shared libraries: libiconv.so.2: cannot open shared object file: No such file or directory

Work dir:
  /projects1/users/fellows/nextflow/eager2/my_test/work/07/cc9e073b614a503fafe1f46f3ad364

Tip: when you have fixed the problem you can continue the execution appending to the nextflow command line the option `-resume`

Run times

Fri Nov 02 14:40:05 CET 2018 - Fri Nov 02 14:49:57 CET 2018 (duration: 9m 52s)

  9 succeeded  

  0 cached  

  0 ignored  

  4 failed  

Nextflow command

nextflow run nf-core/eager --reads EXB015.A1701/*_R{1,2}*fastq.gz --pairedEnd --fasta ~References/hg19_MT.fasta -profile standard,conda --max_cpus 4 --max_memory 16G -r dev

CPU-Hours

(a few seconds)

Launch directory

/projects1/users/fellows/nextflow/eager2/my_test

Work directory

/projects1/users/fellows/nextflow/eager2/my_test/work

Project directory

/projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager

Script name

main.nf

Script ID

b830dc186a77957a7b56fd9b3a6233ea

Workflow session

dc029987-4948-4e40-b30e-784f6c02d367

Workflow repository

https://github.com/nf-core/eager.git, revision dev (commit hash 3778a787393393586e86d9299bd0959d00f952e0)

Workflow profile

standard,conda

Workflow container

nfcore/eager:2.0.1

Container engine

-

Nextflow version

version 0.32.0, build 4897 (27-09-2018 10:17 UTC)