Nextflow workflow report

[sharp_meitner]

Run times

Sat Feb 02 11:46:34 CET 2019 - Sat Feb 02 14:29:26 CET 2019 (duration: 2h 42m 51s)

  33 succeeded  

  0 cached  

  0 ignored  

  0 failed  

Nextflow command

nextflow run nf-core/eager -c /projects1/users/fellows/nextflow/nextflow_custom.config -profile shh_custom --reads '/projects1/microbiome_calculus/RIII/03-preprocessing/pairment_splitting/preprocessed_se/*/*_R1_*.fq.gz' --singleEnd --fasta /projects1/microbiome_calculus/RIII/01-data/reference_genomes/HG19/hg19_complete.fasta --bwa_index /projects1/microbiome_calculus/RIII/01-data/reference_genomes/HG19/ --seq_dict /projects1/microbiome_calculus/RIII/01-data/reference_genomes/HG19/hg19_complete.dict --fasta_index /projects1/microbiome_calculus/RIII/01-data/reference_genomes/HG19/hg19_complete.fasta.fai --outdir /projects1/microbiome_calculus/RIII/03-preprocessing/sequencing_qc/preprocessed_se/ --name RIII_se_preprocessed --email fellows@shh.mpg.de --max_cpus 4 --max_mem 32.GB --skip_preseq --min_adap_overlap 1 --clip_readlength 30 --clip_min_read_quality 20 --bwaalnn 0.01 --bwaalnl 32 --bam_discard_unmapped --bam_unmapped_type fastq --dedupper dedup --dedup_all_merged -resume -r 2.0.5

CPU-Hours

18.1

Launch directory

/projects1/microbiome_calculus/RIII/03-preprocessing/sequencing_qc/preprocessed_se

Work directory

/projects1/microbiome_calculus/RIII/03-preprocessing/sequencing_qc/preprocessed_se/work

Project directory

/projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager

Script name

main.nf

Script ID

16fccad846b1999cdace9a881b21f66a

Workflow session

38dc9c15-bdde-4657-827b-e423489f5a7c

Workflow repository

https://github.com/nf-core/eager.git, revision 2.0.5 (commit hash 2786af36de77d1f27c9e23d4657b7771e20cd4ef)

Workflow profile

shh_custom

Workflow container

nfcore/eager:2.0.5

Container engine

-

Nextflow version

version 19.01.0, build 5050 (22-01-2019 11:19 UTC)