Mar-07 17:38:15.290 [main] DEBUG nextflow.cli.Launcher - $> nextflow run nf-core/eager -r dev -profile docker --pairedEnd --bwa_index /data/references/Hordeum/ --fasta /data/references/Hordeum/Hordeum_vulgare.IBSC_v2.dna.toplevel.fa --reads '*_R{1,2}.fastq' --clip_forward_adaptor AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC --clip_reverse_adaptor AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT -resume --large_ref Mar-07 17:38:15.482 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 19.01.0 Mar-07 17:38:16.629 [main] DEBUG nextflow.scm.AssetManager - Git config: /home/vanschah/.nextflow/assets/nf-core/eager/.git/config; branch: master; remote: origin; url: https://github.com/nf-core/eager.git Mar-07 17:38:16.643 [main] DEBUG nextflow.scm.AssetManager - Git config: /home/vanschah/.nextflow/assets/nf-core/eager/.git/config; branch: master; remote: origin; url: https://github.com/nf-core/eager.git Mar-07 17:38:16.985 [main] DEBUG nextflow.scm.AssetManager - Git config: /home/vanschah/.nextflow/assets/nf-core/eager/.git/config; branch: master; remote: origin; url: https://github.com/nf-core/eager.git Mar-07 17:38:16.985 [main] INFO nextflow.cli.CmdRun - Launching `nf-core/eager` [nasty_ramanujan] - revision: ae7ffb48a5 [dev] Mar-07 17:38:17.756 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /home/vanschah/.nextflow/assets/nf-core/eager/nextflow.config Mar-07 17:38:17.757 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/vanschah/.nextflow/assets/nf-core/eager/nextflow.config Mar-07 17:38:17.774 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `docker` Mar-07 17:38:18.405 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [hebbe, cfc, uppmax_devel, uzh, debug, test, crick, uppmax, testbam, docker, gis, phoenix, shh, ccga, mendel, conda, uct_hex, awsbatch, singularity, munin, binac] Mar-07 17:38:18.450 [main] DEBUG nextflow.Session - Session uuid: 388ea561-ef2c-4c17-b973-1e0830dd3a50 Mar-07 17:38:18.450 [main] DEBUG nextflow.Session - Run name: nasty_ramanujan Mar-07 17:38:18.451 [main] DEBUG nextflow.Session - Executor pool size: 8 Mar-07 17:38:18.464 [main] DEBUG nextflow.cli.CmdRun - Version: 19.01.0 build 5050 Modified: 22-01-2019 11:19 UTC (11:19 BST) System: Linux 4.15.0-45-generic Runtime: Groovy 2.5.5 on Java HotSpot(TM) 64-Bit Server VM 1.8.0_201-b09 Encoding: UTF-8 (UTF-8) Process: 31175@arsenal [157.140.105.7] CPUs: 8 - Mem: 125.9 GB (9 GB) - Swap: 122.1 GB (122.1 GB) Mar-07 17:38:18.488 [main] DEBUG nextflow.Session - Work-dir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work [xfs] Mar-07 17:38:18.828 [main] DEBUG nextflow.Session - Session start invoked Mar-07 17:38:18.832 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start Mar-07 17:38:18.833 [main] DEBUG nextflow.trace.TraceFileObserver - Flow starting -- trace file: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/results/pipeline_info/nf-core/eager_trace.txt Mar-07 17:38:18.836 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing Mar-07 17:38:20.032 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution Mar-07 17:38:20.208 [PathVisitor-1] DEBUG nextflow.file.PathVisitor - files for syntax: glob; folder: ./; pattern: *_R{1,2}.fastq; options: [:] Mar-07 17:38:20.238 [main] INFO nextflow.Nextflow - ========================================= Mar-07 17:38:20.239 [main] INFO nextflow.Nextflow - nf-core/eager v2.0.7dev Mar-07 17:38:20.239 [main] INFO nextflow.Nextflow - ========================================= Mar-07 17:38:20.248 [main] INFO nextflow.Nextflow - Pipeline Name : nf-core/eager Pipeline Version : 2.0.7dev Run Name : nasty_ramanujan Reads : *_R{1,2}.fastq Fasta Ref : /data/references/Hordeum/Hordeum_vulgare.IBSC_v2.dna.toplevel.fa BAM Index Type : CSI BWA Index : /data/references/Hordeum/ Data Type : Paired-End Skip Collapsing : No Skip Trimming : No Max Memory : 128 GB Max CPUs : 16 Max Time : 10d Output dir : ./results Working dir : /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work Container Engine : docker Container : nfcore/eager:dev Current home : /home/vanschah Current user : vanschah Current path : /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat Script dir : /home/vanschah/.nextflow/assets/nf-core/eager Config Profile : docker Mar-07 17:38:20.248 [main] INFO nextflow.Nextflow - ========================================= Mar-07 17:38:20.341 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.341 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.347 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.349 [main] INFO nextflow.executor.Executor - [warm up] executor > local Mar-07 17:38:20.353 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=8; memory=125.9 GB; capacity=8; pollInterval=100ms; dumpInterval=5m Mar-07 17:38:20.357 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: LocalPollingMonitor Mar-07 17:38:20.358 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local) Mar-07 17:38:20.361 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: local Mar-07 17:38:20.396 [main] DEBUG nextflow.Session - >>> barrier register (process: makeFastaIndex) Mar-07 17:38:20.399 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > makeFastaIndex -- maxForks: 8 Mar-07 17:38:20.426 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:makeSeqDict` matches process makeSeqDict Mar-07 17:38:20.428 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.428 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.428 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.429 [main] DEBUG nextflow.Session - >>> barrier register (process: makeSeqDict) Mar-07 17:38:20.430 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > makeSeqDict -- maxForks: 8 Mar-07 17:38:20.448 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:convertBam` matches process convertBam Mar-07 17:38:20.449 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.449 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.450 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.451 [main] DEBUG nextflow.Session - >>> barrier register (process: convertBam) Mar-07 17:38:20.451 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > convertBam -- maxForks: 8 Mar-07 17:38:20.466 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: convertBam) Mar-07 17:38:20.486 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:fastqc` matches process fastqc Mar-07 17:38:20.488 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.488 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.489 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.491 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc) Mar-07 17:38:20.491 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc -- maxForks: 8 Mar-07 17:38:20.508 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.508 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.510 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.511 [main] DEBUG nextflow.Session - >>> barrier register (process: fastp) Mar-07 17:38:20.512 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastp -- maxForks: 8 Mar-07 17:38:20.555 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.556 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.556 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.562 [main] DEBUG nextflow.Session - >>> barrier register (process: adapter_removal) Mar-07 17:38:20.563 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > adapter_removal -- maxForks: 8 Mar-07 17:38:20.570 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: fastp) Mar-07 17:38:20.577 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.577 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.577 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.579 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc_after_clipping) Mar-07 17:38:20.580 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc_after_clipping -- maxForks: 8 Mar-07 17:38:20.618 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:bwa` matches process bwa Mar-07 17:38:20.621 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.621 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.621 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.622 [main] DEBUG nextflow.Session - >>> barrier register (process: bwa) Mar-07 17:38:20.623 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bwa -- maxForks: 8 Mar-07 17:38:20.765 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.765 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.765 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.766 [main] DEBUG nextflow.Session - >>> barrier register (process: circulargenerator) Mar-07 17:38:20.766 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > circulargenerator -- maxForks: 8 Mar-07 17:38:20.777 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: circulargenerator) Mar-07 17:38:20.783 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.783 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.783 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.784 [main] DEBUG nextflow.Session - >>> barrier register (process: circularmapper) Mar-07 17:38:20.785 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > circularmapper -- maxForks: 8 Mar-07 17:38:20.790 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: circularmapper) Mar-07 17:38:20.803 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:bwamem` matches process bwamem Mar-07 17:38:20.804 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.804 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.804 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.806 [main] DEBUG nextflow.Session - >>> barrier register (process: bwamem) Mar-07 17:38:20.806 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bwamem -- maxForks: 8 Mar-07 17:38:20.817 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.817 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.818 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.818 [main] DEBUG nextflow.Session - >>> barrier register (process: samtools_idxstats) Mar-07 17:38:20.819 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > samtools_idxstats -- maxForks: 8 Mar-07 17:38:20.835 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.835 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.835 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.836 [main] DEBUG nextflow.Session - >>> barrier register (process: samtools_filter) Mar-07 17:38:20.836 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > samtools_filter -- maxForks: 8 Mar-07 17:38:20.843 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.843 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.843 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.844 [main] DEBUG nextflow.Session - >>> barrier register (process: dedup) Mar-07 17:38:20.844 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > dedup -- maxForks: 8 Mar-07 17:38:20.848 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:preseq` matches process preseq Mar-07 17:38:20.849 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.849 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.849 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.849 [main] DEBUG nextflow.Session - >>> barrier register (process: preseq) Mar-07 17:38:20.850 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > preseq -- maxForks: 8 Mar-07 17:38:20.861 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.862 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.863 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.866 [main] DEBUG nextflow.Session - >>> barrier register (process: damageprofiler) Mar-07 17:38:20.866 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > damageprofiler -- maxForks: 8 Mar-07 17:38:20.872 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:20.877 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:qualimap` matches process qualimap Mar-07 17:38:20.878 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.878 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.879 [Task submitter] INFO nextflow.Session - [65/55cfa6] Submitted process > fastqc (Sample1) Mar-07 17:38:20.879 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.880 [main] DEBUG nextflow.Session - >>> barrier register (process: qualimap) Mar-07 17:38:20.880 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > qualimap -- maxForks: 8 Mar-07 17:38:20.885 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:markDup` matches process markDup Mar-07 17:38:20.885 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.885 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.885 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.886 [main] DEBUG nextflow.Session - >>> barrier register (process: markDup) Mar-07 17:38:20.886 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > markDup -- maxForks: 8 Mar-07 17:38:20.893 [Actor Thread 3] INFO nextflow.processor.TaskProcessor - [6b/f3c1e2] Cached process > makeFastaIndex (Hordeum_vulgare.IBSC_v2.dna.toplevel.fa) Mar-07 17:38:20.898 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.898 [Actor Thread 5] INFO nextflow.processor.TaskProcessor - [22/1fb63a] Cached process > makeSeqDict (Hordeum_vulgare.IBSC_v2.dna.toplevel.fa) Mar-07 17:38:20.898 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.899 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.900 [main] DEBUG nextflow.Session - >>> barrier register (process: pmdtools) Mar-07 17:38:20.901 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > pmdtools -- maxForks: 8 Mar-07 17:38:20.905 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:bam_trim` matches process bam_trim Mar-07 17:38:20.906 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.906 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.906 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.906 [main] DEBUG nextflow.Session - >>> barrier register (process: bam_trim) Mar-07 17:38:20.906 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bam_trim -- maxForks: 8 Mar-07 17:38:20.907 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:20.909 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.909 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.909 [Task submitter] INFO nextflow.Session - [ce/87cc2d] Submitted process > fastqc (Sample4) Mar-07 17:38:20.909 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.909 [main] DEBUG nextflow.Session - >>> barrier register (process: output_documentation) Mar-07 17:38:20.909 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > output_documentation -- maxForks: 8 Mar-07 17:38:20.919 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:20.920 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:get_software_versions` matches process get_software_versions Mar-07 17:38:20.920 [Task submitter] INFO nextflow.Session - [d7/f27f6d] Submitted process > fastqc (Sample3) Mar-07 17:38:20.920 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:20.921 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:20.921 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:20.921 [main] DEBUG nextflow.Session - >>> barrier register (process: get_software_versions) Mar-07 17:38:20.921 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > get_software_versions -- maxForks: 8 Mar-07 17:38:20.934 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:20.940 [Task submitter] INFO nextflow.Session - [d9/b6d7ff] Submitted process > fastqc (Sample2) Mar-07 17:38:20.960 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:20.963 [Task submitter] INFO nextflow.Session - [07/ac8385] Submitted process > adapter_removal (Sample4) Mar-07 17:38:20.974 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: makeSeqDict) Mar-07 17:38:20.981 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:20.983 [Task submitter] INFO nextflow.Session - [ae/8375bb] Submitted process > adapter_removal (Sample3) Mar-07 17:38:20.983 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: makeFastaIndex) Mar-07 17:38:20.994 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:20.997 [Task submitter] INFO nextflow.Session - [c3/f637b6] Submitted process > adapter_removal (Sample2) Mar-07 17:38:21.011 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:38:21.017 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:multiqc` matches process multiqc Mar-07 17:38:21.017 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null Mar-07 17:38:21.017 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local' Mar-07 17:38:21.018 [main] DEBUG nextflow.executor.Executor - Initializing executor: local Mar-07 17:38:21.019 [main] DEBUG nextflow.Session - >>> barrier register (process: multiqc) Mar-07 17:38:21.020 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > multiqc -- maxForks: 8 Mar-07 17:38:21.024 [main] DEBUG nextflow.script.ScriptRunner - > Await termination Mar-07 17:38:21.024 [main] DEBUG nextflow.Session - Session await Mar-07 17:38:21.025 [Task submitter] INFO nextflow.Session - [60/7ebd7c] Submitted process > adapter_removal (Sample1) Mar-07 17:43:20.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 8 -- pending tasks are shown below ~> TaskHandler[id: 3; name: fastqc (Sample1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/65/55cfa650e5242209f0ac11ff1db124] ~> TaskHandler[id: 5; name: fastqc (Sample4); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ce/87cc2d2085590d56f870b24d98db76] ~> TaskHandler[id: 6; name: fastqc (Sample3); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/d7/f27f6da328f816c2a475327d03986a] ~> TaskHandler[id: 4; name: fastqc (Sample2); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/d9/b6d7ffb400c5422954c677852e80d9] ~> TaskHandler[id: 13; name: adapter_removal (Sample4); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/07/ac8385798fbb205374739b52537564] ~> TaskHandler[id: 14; name: adapter_removal (Sample3); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ae/8375bbe68c24f175f2874f823b44f2] ~> TaskHandler[id: 12; name: adapter_removal (Sample2); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/c3/f637b6b475e482b5d92b9864acaac0] ~> TaskHandler[id: 11; name: adapter_removal (Sample1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/60/7ebd7cea16ac05551ba6d5164f026a] Mar-07 17:44:01.442 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: fastqc (Sample1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/65/55cfa650e5242209f0ac11ff1db124] Mar-07 17:44:01.480 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:44:01.480 [Task submitter] INFO nextflow.Session - [e0/dcb54c] Submitted process > output_documentation (1) Mar-07 17:44:13.164 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: output_documentation (1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/e0/dcb54cf7060d012a9f243e98e5de46] Mar-07 17:44:13.187 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: output_documentation) Mar-07 17:45:07.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: fastqc (Sample3); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/d7/f27f6da328f816c2a475327d03986a] Mar-07 17:45:48.029 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: fastqc (Sample2); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/d9/b6d7ffb400c5422954c677852e80d9] Mar-07 17:46:13.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: fastqc (Sample4); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ce/87cc2d2085590d56f870b24d98db76] Mar-07 17:46:13.545 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc) Mar-07 17:48:20.533 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below ~> TaskHandler[id: 13; name: adapter_removal (Sample4); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/07/ac8385798fbb205374739b52537564] ~> TaskHandler[id: 14; name: adapter_removal (Sample3); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ae/8375bbe68c24f175f2874f823b44f2] ~> TaskHandler[id: 12; name: adapter_removal (Sample2); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/c3/f637b6b475e482b5d92b9864acaac0] ~> TaskHandler[id: 11; name: adapter_removal (Sample1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/60/7ebd7cea16ac05551ba6d5164f026a] Mar-07 17:53:20.617 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below ~> TaskHandler[id: 13; name: adapter_removal (Sample4); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/07/ac8385798fbb205374739b52537564] ~> TaskHandler[id: 14; name: adapter_removal (Sample3); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ae/8375bbe68c24f175f2874f823b44f2] ~> TaskHandler[id: 12; name: adapter_removal (Sample2); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/c3/f637b6b475e482b5d92b9864acaac0] ~> TaskHandler[id: 11; name: adapter_removal (Sample1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/60/7ebd7cea16ac05551ba6d5164f026a] Mar-07 17:56:02.783 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: adapter_removal (Sample1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/60/7ebd7cea16ac05551ba6d5164f026a] Mar-07 17:56:02.802 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:56:02.803 [Task submitter] INFO nextflow.Session - [14/647aac] Submitted process > fastqc_after_clipping (Sample1_R1) Mar-07 17:56:02.880 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 17:58:20.671 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below ~> TaskHandler[id: 13; name: adapter_removal (Sample4); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/07/ac8385798fbb205374739b52537564] ~> TaskHandler[id: 14; name: adapter_removal (Sample3); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ae/8375bbe68c24f175f2874f823b44f2] ~> TaskHandler[id: 12; name: adapter_removal (Sample2); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/c3/f637b6b475e482b5d92b9864acaac0] ~> TaskHandler[id: 18; name: fastqc_after_clipping (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/14/647aacc894467414c480eebbbd53a3] Mar-07 17:58:35.577 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: adapter_removal (Sample2); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/c3/f637b6b475e482b5d92b9864acaac0] Mar-07 17:58:59.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: fastqc_after_clipping (Sample1_R1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/14/647aacc894467414c480eebbbd53a3] Mar-07 17:58:59.161 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 17:58:59.161 [Task submitter] INFO nextflow.Session - [e1/9c5545] Submitted process > fastqc_after_clipping (Sample2_R1) Mar-07 18:02:20.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: fastqc_after_clipping (Sample2_R1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/e1/9c5545760e0612c02c183512b2610f] Mar-07 18:02:20.580 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 2 -- tasks to be submitted are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 18:02:30.172 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: adapter_removal (Sample3); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ae/8375bbe68c24f175f2874f823b44f2] Mar-07 18:03:20.743 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 13; name: adapter_removal (Sample4); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/07/ac8385798fbb205374739b52537564] Mar-07 18:04:10.438 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: adapter_removal (Sample4); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/07/ac8385798fbb205374739b52537564] Mar-07 18:04:10.443 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 18:04:10.444 [Task submitter] INFO nextflow.Session - [86/0e38b3] Submitted process > bwa (Sample1_R1) Mar-07 18:04:10.445 [Actor Thread 35] DEBUG nextflow.Session - <<< barrier arrive (process: adapter_removal) Mar-07 18:04:10.451 [Actor Thread 52] DEBUG nextflow.Session - <<< barrier arrive (process: bwamem) Mar-07 18:08:20.771 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:13:20.776 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:18:20.788 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:23:20.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:28:20.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:33:21.054 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:38:21.128 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:43:21.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:48:21.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:53:21.323 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 18:58:21.414 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:03:21.505 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:08:21.559 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:13:21.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:18:21.716 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:23:21.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:28:21.831 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:33:21.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:38:22.006 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:43:22.068 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:48:22.083 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:53:22.085 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 19:58:22.171 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 20:03:22.256 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 20:08:22.352 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 17; name: bwa (Sample1_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 20:13:01.520 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: bwa (Sample1_R1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/86/0e38b3236536dcb5da3c2a2bd8c68a] Mar-07 20:13:01.592 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 20:13:01.593 [Task submitter] INFO nextflow.Session - [aa/88c3af] Submitted process > bwa (Sample2_R1) Mar-07 20:13:01.597 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 5 -- tasks to be submitted are shown below ~> TaskHandler[id: 23; name: fastqc_after_clipping (Sample3_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/7f/b546001094d24395166222feeaa81a] ~> TaskHandler[id: 24; name: bwa (Sample3_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/bc/9b574500497cb9eff69a3df1a7322e] ~> TaskHandler[id: 26; name: fastqc_after_clipping (Sample4_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ad/8334001718f499c2f06b94647e5fac] ~> TaskHandler[id: 27; name: bwa (Sample4_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ed/aac2e77a971da85fc6a5477996bb80] ~> TaskHandler[id: 30; name: samtools_filter (Sample1_R1.sorted.bam); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/60/e6071d54daa538043cb96c81ceb156] Mar-07 20:13:22.439 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:18:22.540 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:23:22.548 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:28:22.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:33:22.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:38:22.725 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:43:22.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:48:22.910 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:53:23.005 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 20:58:23.034 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:03:23.129 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:08:23.217 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:13:23.221 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:18:23.241 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:23:23.329 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:28:23.416 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:33:23.422 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:38:23.429 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 22; name: bwa (Sample2_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:38:30.573 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: bwa (Sample2_R1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/aa/88c3afb4c0f2e30ed0c083bcaaeb07] Mar-07 21:38:30.577 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.578 [Task submitter] INFO nextflow.Session - [7f/b54600] Submitted process > fastqc_after_clipping (Sample3_R1) Mar-07 21:38:30.583 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.584 [Task submitter] INFO nextflow.Session - [ad/833400] Submitted process > fastqc_after_clipping (Sample4_R1) Mar-07 21:38:30.606 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.606 [Task submitter] INFO nextflow.Session - [60/e6071d] Submitted process > samtools_filter (Sample1_R1.sorted.bam) Mar-07 21:38:30.616 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.616 [Task submitter] INFO nextflow.Session - [24/d3a3ff] Submitted process > damageprofiler (Sample1_R1.sorted) Mar-07 21:38:30.623 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.624 [Task submitter] INFO nextflow.Session - [05/0c67bf] Submitted process > samtools_idxstats (Sample1_R1.sorted) Mar-07 21:38:30.630 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.630 [Task submitter] INFO nextflow.Session - [e6/fe8db5] Submitted process > samtools_filter (Sample2_R1.sorted.bam) Mar-07 21:38:30.638 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.638 [Task submitter] INFO nextflow.Session - [51/7a19f8] Submitted process > damageprofiler (Sample2_R1.sorted) Mar-07 21:38:30.645 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:38:30.646 [Task submitter] INFO nextflow.Session - [f1/ce3b9a] Submitted process > samtools_idxstats (Sample2_R1.sorted) Mar-07 21:38:30.648 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 2 -- tasks to be submitted are shown below ~> TaskHandler[id: 24; name: bwa (Sample3_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/bc/9b574500497cb9eff69a3df1a7322e] ~> TaskHandler[id: 27; name: bwa (Sample4_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ed/aac2e77a971da85fc6a5477996bb80] Mar-07 21:39:10.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 31; name: samtools_idxstats (Sample1_R1.sorted); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/05/0c67bf2fc6822c33cea57c12bd3ef5] Mar-07 21:39:19.060 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 32; name: samtools_idxstats (Sample2_R1.sorted); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/f1/ce3b9ab2256fd95e83311401725b7f] Mar-07 21:41:57.926 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 30; name: samtools_filter (Sample1_R1.sorted.bam); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/60/e6071d54daa538043cb96c81ceb156] Mar-07 21:41:58.070 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process samtools_filter > Skipping output binding because one or more optional files are missing: fileoutparam<1> Mar-07 21:41:58.070 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process samtools_filter > Skipping output binding because one or more optional files are missing: fileoutparam<2> Mar-07 21:42:05.888 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 34; name: samtools_filter (Sample2_R1.sorted.bam); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/e6/fe8db51e9c9f838d874327bc757886] Mar-07 21:42:05.897 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process samtools_filter > Skipping output binding because one or more optional files are missing: fileoutparam<1> Mar-07 21:42:05.897 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:42:05.897 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process samtools_filter > Skipping output binding because one or more optional files are missing: fileoutparam<2> Mar-07 21:42:05.901 [Task submitter] INFO nextflow.Session - [1d/e99894] Submitted process > dedup (Sample1_R1.sorted.bam.filtered) Mar-07 21:43:21.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: fastqc_after_clipping (Sample3_R1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/7f/b546001094d24395166222feeaa81a] Mar-07 21:43:21.642 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 21:43:21.642 [Task submitter] INFO nextflow.Session - [5e/da1e52] Submitted process > dedup (Sample2_R1.sorted.bam.filtered) Mar-07 21:43:23.435 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 5 -- pending tasks are shown below ~> TaskHandler[id: 26; name: fastqc_after_clipping (Sample4_R1); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ad/8334001718f499c2f06b94647e5fac] ~> TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] ~> TaskHandler[id: 36; name: dedup (Sample1_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/e998949a98a189b6e3ffe0eea26e02] ~> TaskHandler[id: 39; name: dedup (Sample2_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/5e/da1e52d179d5485662e3446fec2de2] Mar-07 21:43:36.141 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 26; name: fastqc_after_clipping (Sample4_R1); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ad/8334001718f499c2f06b94647e5fac] Mar-07 21:43:36.142 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 24; name: bwa (Sample3_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/bc/9b574500497cb9eff69a3df1a7322e] ~> TaskHandler[id: 27; name: bwa (Sample4_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ed/aac2e77a971da85fc6a5477996bb80] ~> TaskHandler[id: 35; name: qualimap (Sample1_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/72/cb611a0627a27d5df91ebd17b6e23d] ~> TaskHandler[id: 38; name: qualimap (Sample2_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/70ce18adf01a3269452a4aae32865b] Mar-07 21:43:36.145 [Actor Thread 71] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc_after_clipping) Mar-07 21:48:23.474 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below ~> TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] ~> TaskHandler[id: 36; name: dedup (Sample1_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/e998949a98a189b6e3ffe0eea26e02] ~> TaskHandler[id: 39; name: dedup (Sample2_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/5e/da1e52d179d5485662e3446fec2de2] Mar-07 21:53:23.539 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below ~> TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] ~> TaskHandler[id: 36; name: dedup (Sample1_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/e998949a98a189b6e3ffe0eea26e02] ~> TaskHandler[id: 39; name: dedup (Sample2_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/5e/da1e52d179d5485662e3446fec2de2] Mar-07 21:58:23.610 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 4 -- pending tasks are shown below ~> TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] ~> TaskHandler[id: 36; name: dedup (Sample1_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/e998949a98a189b6e3ffe0eea26e02] ~> TaskHandler[id: 39; name: dedup (Sample2_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/5e/da1e52d179d5485662e3446fec2de2] Mar-07 22:03:19.394 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 36; name: dedup (Sample1_R1.sorted.bam.filtered); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/e998949a98a189b6e3ffe0eea26e02] Mar-07 22:03:19.398 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 24; name: bwa (Sample3_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/bc/9b574500497cb9eff69a3df1a7322e] ~> TaskHandler[id: 27; name: bwa (Sample4_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ed/aac2e77a971da85fc6a5477996bb80] ~> TaskHandler[id: 35; name: qualimap (Sample1_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/72/cb611a0627a27d5df91ebd17b6e23d] ~> TaskHandler[id: 38; name: qualimap (Sample2_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/70ce18adf01a3269452a4aae32865b] Mar-07 22:03:19.506 [Actor Thread 80] DEBUG nextflow.Session - <<< barrier arrive (process: pmdtools) Mar-07 22:03:23.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- pending tasks are shown below ~> TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] ~> TaskHandler[id: 39; name: dedup (Sample2_R1.sorted.bam.filtered); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/5e/da1e52d179d5485662e3446fec2de2] Mar-07 22:05:11.230 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 39; name: dedup (Sample2_R1.sorted.bam.filtered); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/5e/da1e52d179d5485662e3446fec2de2] Mar-07 22:05:11.241 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 22:05:11.242 [Task submitter] INFO nextflow.Session - [d1/5ce4c2] Submitted process > preseq (Sample1_R1.sorted.bam.filtered) Mar-07 22:05:29.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 41; name: preseq (Sample1_R1.sorted.bam.filtered); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/d1/5ce4c2146f8d292c753bebc39f2b19] Mar-07 22:05:29.112 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run Mar-07 22:05:29.112 [Task submitter] INFO nextflow.Session - [f7/366742] Submitted process > preseq (Sample2_R1.sorted.bam.filtered) Mar-07 22:05:41.250 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 44; name: preseq (Sample2_R1.sorted.bam.filtered); status: COMPLETED; exit: 0; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/f7/36674218904f365d5ec4f48b4ece4d] Mar-07 22:08:23.674 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- pending tasks are shown below ~> TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] Mar-07 22:13:23.722 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- pending tasks are shown below ~> TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] Mar-07 22:18:14.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 29; name: damageprofiler (Sample1_R1.sorted); status: COMPLETED; exit: 1; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1] Mar-07 22:18:14.636 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 24; name: bwa (Sample3_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/bc/9b574500497cb9eff69a3df1a7322e] ~> TaskHandler[id: 27; name: bwa (Sample4_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ed/aac2e77a971da85fc6a5477996bb80] ~> TaskHandler[id: 35; name: qualimap (Sample1_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/72/cb611a0627a27d5df91ebd17b6e23d] ~> TaskHandler[id: 38; name: qualimap (Sample2_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/70ce18adf01a3269452a4aae32865b] Mar-07 22:18:14.675 [Task monitor] ERROR nextflow.processor.TaskProcessor - Error executing process > 'damageprofiler (Sample1_R1.sorted)' Caused by: Process `damageprofiler (Sample1_R1.sorted)` terminated with an error exit status (1) Command executed: damageprofiler -i Sample1_R1.sorted.bam -r Hordeum_vulgare.IBSC_v2.dna.toplevel.fa -l 100 -t 15 -o . Command exit status: 1 Command output: DamageProfiler v0.4.4 Command error: WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:11405:14721:10375 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:11406:5002:16779 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:11512:16287:4338 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:11608:24847:6528 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:11611:5298:6461 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:21404:15188:5553 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:21506:19502:6932 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:21512:21843:12310 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:21512:15250:14777 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:4:21612:25889:14924 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. NS500271:138:HCWHCAFXY:1:21308:16008:11412 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. NS500271:138:HCWHCAFXY:2:11311:24713:2848 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. NS500271:138:HCWHCAFXY:2:21311:22652:8074 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. NS500271:138:HCWHCAFXY:3:21504:15584:18433 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. NS500271:138:HCWHCAFXY:4:21405:23195:1235 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:11106:5563:17322 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:11204:21462:7413 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:11206:22621:3706 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:11302:3388:17203 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:11311:18926:15802 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:21101:22010:7840 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:21102:25863:9838 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:21205:19417:6307 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:21207:10269:10981 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:21210:16889:5902 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:21306:20256:11844 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:1:21311:7574:11681 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:11104:20740:4161 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:11105:13250:4866 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:11202:3292:6857 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:11211:13546:1080 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:11312:22862:17775 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:21104:9475:6822 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:21106:20766:19872 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:21204:17642:9593 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:21211:1333:10007 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:21303:12413:19100 record bin field value is incorrect. WARNING 2019-03-07 22:18:02 SAMRecord chr4H reference length is too large for BAM bin field. M_NS500271:138:HCWHCAFXY:2:21307:5495:5636 record bin field value is incorrect. Exception in thread "main" java.lang.OutOfMemoryError: Java heap space at java.util.Arrays.copyOf(Arrays.java:3181) at java.util.ArrayList.grow(ArrayList.java:261) at java.util.ArrayList.ensureExplicitCapacity(ArrayList.java:235) at java.util.ArrayList.ensureCapacityInternal(ArrayList.java:227) at java.util.ArrayList.add(ArrayList.java:458) at calculations.LengthDistribution.fillDistributionTable(LengthDistribution.java:61) at calculations.DamageProfiler.processRecord(DamageProfiler.java:217) at calculations.DamageProfiler.handleRecord(DamageProfiler.java:140) at calculations.DamageProfiler.extractSAMRecords(DamageProfiler.java:104) at calculations.StartCalculations.start(StartCalculations.java:258) at RunDamageProfiler.main(RunDamageProfiler.java:37) Work dir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/24/d3a3ff582b01d4aaebeb2f4820bba1 Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out` Mar-07 22:18:14.681 [Task monitor] INFO nextflow.Session - Execution cancelled -- Finishing pending tasks before exit Mar-07 22:18:14.697 [main] DEBUG nextflow.Session - Session await > all process finished Mar-07 22:18:23.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] Mar-07 22:23:23.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- pending tasks are shown below ~> TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: RUNNING; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] Mar-07 22:25:23.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 33; name: damageprofiler (Sample2_R1.sorted); status: COMPLETED; exit: 1; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/51/7a19f8d06f5a45e0f72ddf092678a8] Mar-07 22:25:23.648 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 4 -- tasks to be submitted are shown below ~> TaskHandler[id: 24; name: bwa (Sample3_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/bc/9b574500497cb9eff69a3df1a7322e] ~> TaskHandler[id: 27; name: bwa (Sample4_R1); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/ed/aac2e77a971da85fc6a5477996bb80] ~> TaskHandler[id: 35; name: qualimap (Sample1_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/72/cb611a0627a27d5df91ebd17b6e23d] ~> TaskHandler[id: 38; name: qualimap (Sample2_R1.sorted.bam.filtered); status: NEW; exit: -; error: -; workDir: /data/workspace/vanschah/Domestication_barley/cat_fastq/eager_cat/work/1d/70ce18adf01a3269452a4aae32865b] Mar-07 22:28:23.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 22:33:23.949 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 22:38:23.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 22:43:23.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 22:48:23.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 22:53:24.070 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 22:58:24.156 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:03:24.261 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:08:24.279 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:13:24.282 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:18:24.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:23:24.286 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:28:24.302 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:33:24.302 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:38:24.396 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:43:24.474 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:48:24.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:53:24.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-07 23:58:24.697 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:03:24.699 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:08:24.794 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:13:24.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:18:24.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:23:24.967 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:28:25.053 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:33:25.147 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:38:25.232 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:43:25.239 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:48:25.333 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:53:25.336 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 00:58:25.428 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:03:25.523 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:08:25.542 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:13:25.643 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:18:25.735 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:23:25.819 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:28:25.903 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:33:25.984 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:38:25.991 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:43:26.081 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:48:26.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:53:26.240 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 01:58:26.325 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:03:26.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:08:26.491 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:13:26.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:18:26.587 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:23:26.594 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:28:26.680 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:33:26.767 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:38:26.790 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:43:26.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:48:26.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:53:26.895 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 02:58:26.978 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:03:27.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:08:27.058 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:13:27.149 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:18:27.249 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:23:27.349 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:28:27.443 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:33:27.523 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:38:27.620 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:43:27.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:48:27.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:53:27.726 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 03:58:27.827 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:03:27.849 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:08:27.855 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:13:27.871 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:18:27.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:23:27.923 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:28:27.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:33:27.972 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:38:28.003 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:43:28.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:48:28.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:53:28.050 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 04:58:28.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:03:28.192 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:08:28.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:13:28.253 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:18:28.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:23:28.311 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:28:28.348 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:33:28.383 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:38:28.410 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:43:28.433 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:48:28.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:53:28.472 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 05:58:28.488 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:03:28.502 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:08:28.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:13:28.682 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:18:28.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:23:28.713 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:28:28.745 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:33:28.776 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:38:28.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:43:28.839 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:48:28.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:53:28.895 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 06:58:28.929 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:03:28.951 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:08:28.951 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:13:29.056 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:18:29.155 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:23:29.256 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:28:29.341 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:33:29.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:38:29.433 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:43:29.536 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:48:29.571 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:53:29.591 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 07:58:29.620 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:03:29.627 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:08:29.719 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:13:29.807 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:18:29.904 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:23:30.001 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:28:30.004 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:33:30.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:38:30.058 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:43:30.080 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:48:30.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:53:30.104 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 08:58:30.204 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:03:30.287 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:08:30.385 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:13:30.475 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:18:30.556 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:23:30.651 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:28:30.653 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:33:30.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:38:30.840 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:43:30.940 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:48:30.945 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:53:31.048 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 09:58:31.047 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:03:31.139 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:08:31.243 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:13:31.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:18:31.336 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:23:31.336 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:28:31.430 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:33:31.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:38:31.514 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:43:31.600 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:48:31.693 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:53:31.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 10:58:31.854 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:03:31.947 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:08:32.031 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:13:32.119 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:18:32.213 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:23:32.296 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:28:32.360 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:33:32.423 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:38:32.484 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:43:32.545 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:48:32.561 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:53:32.613 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 11:58:32.688 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:03:32.743 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:08:32.802 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:13:32.859 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:18:32.932 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:23:33.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:28:33.082 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:33:33.157 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:38:33.222 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:43:33.297 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:48:33.368 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:53:33.439 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 12:58:33.503 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:03:33.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:08:33.631 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:13:33.695 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:18:33.760 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:23:33.823 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:28:33.885 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:33:33.948 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:38:34.002 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:43:34.066 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:48:34.125 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:53:34.184 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 13:58:34.233 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:03:34.287 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:08:34.349 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:13:34.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:18:34.459 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:23:34.522 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:28:34.578 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:33:34.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:38:34.694 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:43:34.760 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:48:34.821 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:53:34.892 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 14:58:34.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:03:35.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:08:35.103 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:13:35.177 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:18:35.255 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:23:35.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:28:35.402 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:33:35.465 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:38:35.512 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:43:35.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:48:35.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:53:35.690 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 15:58:35.749 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:03:35.809 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:08:35.869 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:13:35.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:18:35.962 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:23:36.014 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:28:36.057 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:33:36.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:38:36.140 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:43:36.188 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:48:36.235 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:53:36.285 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 16:58:36.330 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 17:03:36.375 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 17:08:36.416 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 17:13:36.458 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 17:18:36.508 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 17:23:36.566 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled Mar-08 17:28:36.609 [Task monitor] DEBUG n.processor.TaskPollingMonitor - No more task to compute -- Execution may be stalled