Skip to content

Dedup gc overhead fix#498

Merged
jfy133 merged 10 commits intodevfrom
dedup-gc-overhead-fix
Jul 13, 2020
Merged

Dedup gc overhead fix#498
jfy133 merged 10 commits intodevfrom
dedup-gc-overhead-fix

Conversation

@jfy133
Copy link
Copy Markdown
Member

@jfy133 jfy133 commented Jul 12, 2020

nf-core/eager pull request

Includes a fix for DeDup not retrying correctly when crashiing (also addresses #478) and fixes emailing formatting working properly when occurs on fails.

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, also make a PR on the nf-core/eager branch on the nf-core/test-datasets repo
  • Ensure the test suite passes (nextflow run . -profile test,docker --paired_end).
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

Learn more about contributing: CONTRIBUTING.md

@jfy133 jfy133 linked an issue Jul 12, 2020 that may be closed by this pull request
Comment thread conf/base.config
@jfy133 jfy133 merged commit 906b26b into dev Jul 13, 2020
@jfy133 jfy133 deleted the dedup-gc-overhead-fix branch July 20, 2020 07:07
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

ValidExitstatus should be deprecated in code

2 participants