diff --git a/CHANGELOG.md b/CHANGELOG.md index 12dd0b4f1..0c107de7c 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,10 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Dependencies` +- Removed pinning of `tbb` (upstream bug in bioconda fixed) +- Bumped `pigz` to 2.6 to fix rare stall bug when compressing data after AdapterRemoval +- Bumped Bowtie2 to 2.4.2 to fix issues with `tbb` version + ### `Deprecated` ## v2.3.3 - 2021-01-06 diff --git a/environment.yml b/environment.yml index 73a201045..893175dce 100644 --- a/environment.yml +++ b/environment.yml @@ -30,7 +30,7 @@ dependencies: - bioconda::pmdtools=0.60 - bioconda::bedtools=2.29.2 - conda-forge::libiconv=1.15 - - conda-forge::pigz=2.3.4 + - conda-forge::pigz=2.6 - bioconda::sequencetools=1.4.0.6 - bioconda::preseq=2.0.3 - bioconda::fastp=0.20.1 @@ -45,9 +45,8 @@ dependencies: - bioconda::hops=0.35 - conda-forge::biopython=1.76 - conda-forge::xopen=0.9.0 - - bioconda::bowtie2=2.4.1 + - bioconda::bowtie2=2.4.2 - bioconda::eigenstratdatabasetools=1.0.2 - bioconda::mapdamage2=2.2.0 - bioconda::bbmap=38.87 - - conda-forge::tbb=2020.2 # temp for bioconda broken bowtie2, remove once patched in bioconda