diff --git a/CHANGELOG.md b/CHANGELOG.md index c71a07822..a9a23c86b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Fixed` - [#882](https://github.com/nf-core/eager/pull/882) Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to & fix from @Lehmann-Fabian) +- [#879](https://github.com/nf-core/eager/issues/879) Add missing threads parameter for pre-clipping FastQC for single end data that caused insufficient memory in some cases (♥ to @marcel-keller for reporting) ### `Dependencies` diff --git a/main.nf b/main.nf index ae21a644e..3ed1e2f3d 100644 --- a/main.nf +++ b/main.nf @@ -703,7 +703,7 @@ process fastqc { """ } else { """ - fastqc -q $r1 + fastqc -t ${task.cpus} -q $r1 rename 's/_fastqc\\.zip\$/_raw_fastqc.zip/' *_fastqc.zip rename 's/_fastqc\\.html\$/_raw_fastqc.html/' *_fastqc.html """