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Fix rrbs and skip_dedup publishing #294

Fix rrbs and skip_dedup publishing

Fix rrbs and skip_dedup publishing #294

Triggered via pull request December 7, 2025 18:57
Status Success
Total duration 17m 29s
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nf-test.yml

on: pull_request
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Matrix: nf-test
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90 errors and 75 warnings
Test | conda | 3 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 3 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 7 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 7 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 1 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 1 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 2 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 2 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 15 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 15 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 10 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 10 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 9 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 9 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 13 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 13 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 8 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 8 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 12 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 12 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 6 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 6 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 5 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 5 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 3 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 3 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 11 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 11 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 9 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 9 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 4 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 4 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 10 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 10 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 13 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 13 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 4 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 4 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 14 | latest-everything | pipeline
Test with latest-everything failed
Test | conda | 14 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 2 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 2 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 1 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 1 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 2 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 2 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 11 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 11 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 7 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 7 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 5 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 5 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 10 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 10 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 7 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 7 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 12 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 12 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 6 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 6 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 8 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 8 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 8 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 8 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 14 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 14 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 11 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 11 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 15 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 15 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 14 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 14 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 15 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 15 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 13 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 13 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 1 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 1 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 12 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 12 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 5 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 5 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 9 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 9 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 3 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 3 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | docker | 6 | latest-everything | pipeline
Test with latest-everything failed
Test | docker | 6 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | singularity | 4 | latest-everything | pipeline
Test with latest-everything failed
Test | singularity | 4 | latest-everything | pipeline
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/25.11.0-edge/x64/nextflow' failed with exit code 1
Test | conda | 3 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 7 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 1 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 2 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 15 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 10 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 9 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 13 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 8 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 12 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 6 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 5 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 3 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 11 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 9 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 4 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 10 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 13 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 4 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 14 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 2 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 1 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 2 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 11 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 7 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 5 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 10 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 7 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 12 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 6 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 8 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 8 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 14 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 11 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 15 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 14 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 15 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 13 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 1 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 12 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 5 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 9 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 3 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | docker | 6 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | singularity | 4 | latest-everything | pipeline
Test with latest-everything failed but will not cause workflow failure. Please check if the error is expected or if it needs fixing.
Test | conda | 7 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 7 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 11 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 11 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 6 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 6 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 14 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 14 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 8 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 8 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 5 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 5 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 9 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 9 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 12 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 12 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 10 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 10 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 15 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 15 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 13 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 13 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 1 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 1 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 3 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 3 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 4 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 4 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config
Test | conda | 2 | 25.04.0 | pipeline
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
Test | conda | 2 | 25.04.0 | pipeline
CondaKeyError: 'channels': value 'defaults' not present in config