Merge pull request #448 from jonasscheid/fix/pin-tdf2mzml

Pin tdf2mzml container to 0.4_noentry

Author: jonasscheid

modules/local/tdf2mzml/main.nf

@@ -1,21 +1,21 @@
 process TDF2MZML {
     tag "$meta.id"
 
-    container "docker.io/mfreitas/tdf2mzml"
+    container "docker.io/mfreitas/tdf2mzml:0.4_noentry"
 
     input:
     tuple val(meta), path(tdf)
 
     output:
     tuple val(meta), path("*.mzML"), emit: mzml
     tuple val("${task.process}"), val('python'), eval("python3 --version | cut -d ' ' -f2"), topic: versions
-    tuple val("${task.process}"), val('tdf2mzml'), eval("echo 0.3.0"), topic: versions
+    tuple val("${task.process}"), val('tdf2mzml'), eval("tdf2mzml --version | cut -d' ' -f2"), topic: versions
 
     script:
     def prefix = task.ext.prefix ?: "${tdf.simpleName}"
 
     """
-    tdf2mzml.py -i $tdf -o ${prefix}.mzML
+    tdf2mzml -i $tdf -o ${prefix}.mzML
     """
 
     stub: