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FloWuenneFloWuenne
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Add default nf-test snapshot.
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‎tests/default.nf.test.snap‎

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{
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"-profile test": {
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"content": [
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{
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"CELLPOSE": {
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"cellpose": "3.0.1"
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},
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"CLAHE": {
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"molkart_clahe": "0.1.0"
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},
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"CREATE_ANNDATA": {
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"molkart_createanndata": "0.1.0"
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},
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"CREATE_STACK": {
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"molkart_stack": "0.1.0"
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},
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"DEEPCELL_MESMER": {
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"deepcell_mesmer": "0.4.1"
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},
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"MASKFILTER": {
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"molkart_maskfilter": "0.1.0"
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},
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"MINDAGAP_DUPLICATEFINDER": {
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"mindagap": "0.0.2"
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},
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"MINDAGAP_MINDAGAP": {
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"mindagap": "0.0.2"
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},
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"MOLKARTQC": {
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"molkartqc": "0.1.0"
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},
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"SPOT2CELL": {
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"molkart_spot2cell": "0.1.0"
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},
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"STARDIST": {
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"stardist": "0.9.1",
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"python": "3.9.15",
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"tensorflow": "2.10.0",
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"tifffile": "2022.4.8"
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},
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"Workflow": {
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"nf-core/molkart": "v1.2.0dev"
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}
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},
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[
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"anndata",
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"anndata/mem_only_cellpose.adata",
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"anndata/mem_only_mesmer.adata",
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"anndata/mem_only_stardist.adata",
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"clahe",
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"clahe/mem_only_membrane_gridfilled_clahe.tiff",
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"clahe/mem_only_nuclear_gridfilled_clahe.tiff",
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"mindagap",
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"mindagap/mem_only_membrane_gridfilled.tiff",
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"mindagap/mem_only_nuclear_gridfilled.tiff",
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"mindagap/mem_only_spots_markedDups.txt",
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"molkartqc",
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"molkartqc/mem_only.cellpose.spot_QC.csv",
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"molkartqc/mem_only.mesmer.spot_QC.csv",
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"molkartqc/mem_only.stardist.spot_QC.csv",
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"multiqc",
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"multiqc/multiqc_data",
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"multiqc/multiqc_data/llms-full.txt",
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"multiqc/multiqc_data/multiqc.log",
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"multiqc/multiqc_data/multiqc.parquet",
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"multiqc/multiqc_data/multiqc_citations.txt",
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"multiqc/multiqc_data/multiqc_data.json",
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"multiqc/multiqc_data/multiqc_segmentation_stats.txt",
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"multiqc/multiqc_data/multiqc_software_versions.txt",
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"multiqc/multiqc_data/multiqc_sources.txt",
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"multiqc/multiqc_plots",
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"multiqc/multiqc_plots/pdf",
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"multiqc/multiqc_plots/pdf/segmentation_stats.pdf",
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"multiqc/multiqc_plots/png",
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"multiqc/multiqc_plots/png/segmentation_stats.png",
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"multiqc/multiqc_plots/svg",
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"multiqc/multiqc_plots/svg/segmentation_stats.svg",
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"multiqc/multiqc_report.html",
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"pipeline_info",
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"pipeline_info/nf_core_molkart_software_mqc_versions.yml",
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"segmentation",
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"segmentation/cellpose",
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"segmentation/cellpose/mem_only_cellpose_mask.tif",
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"segmentation/filtered_masks",
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"segmentation/filtered_masks/mem_only_cellpose_filtered.csv",
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"segmentation/filtered_masks/mem_only_cellpose_filtered.tif",
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"segmentation/filtered_masks/mem_only_mesmer_filtered.csv",
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"segmentation/filtered_masks/mem_only_mesmer_filtered.tif",
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"segmentation/filtered_masks/mem_only_stardist_filtered.csv",
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"segmentation/filtered_masks/mem_only_stardist_filtered.tif",
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"segmentation/mesmer",
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"segmentation/mesmer/mem_only_mesmer_mask.tif",
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"segmentation/stardist",
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"segmentation/stardist/mem_only_stardist_mask.tif",
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"spot2cell",
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"spot2cell/cellxgene_mem_only_cellpose.csv",
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"spot2cell/cellxgene_mem_only_mesmer.csv",
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"spot2cell/cellxgene_mem_only_stardist.csv",
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"stack",
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"stack/mem_only_stack.ome.tif"
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],
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[
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"mem_only_cellpose.adata:md5,834903214d6cdcc7dd2e10b1ee1b22a3",
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"mem_only_mesmer.adata:md5,530649647a3466316ea52dde9dede4ab",
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"mem_only_stardist.adata:md5,274d0716031a44f7d2948c62c0211824",
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"mem_only_membrane_gridfilled.tiff:md5,6e24160d758468d2de07ca200dfb62c2",
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"mem_only_nuclear_gridfilled.tiff:md5,123763d54f05b2274690b3b84f9690b1",
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"mem_only_spots_markedDups.txt:md5,4562caad05850d7dd7b6e9235e068a8b",
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"mem_only.cellpose.spot_QC.csv:md5,2090a0bc4307e9712a6150bafeb38ec5",
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"mem_only.mesmer.spot_QC.csv:md5,3273bd6fecf93a3d240614d1b38831c9",
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"mem_only.stardist.spot_QC.csv:md5,1b7a3870e08576b07cb5466ffad9da52",
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"multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
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"multiqc_segmentation_stats.txt:md5,387be8d95a9bdcb52a13acedb2b9bd99",
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"mem_only_cellpose_mask.tif:md5,d962bae7277cc7ad8cf96708a806b418",
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"mem_only_cellpose_filtered.csv:md5,4cd99d408b527fb0e74074cbd1880f52",
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"mem_only_cellpose_filtered.tif:md5,33f1f2e79dec6ebb27e2761413c55696",
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"mem_only_mesmer_filtered.csv:md5,d489b06c9cd6cc4218f13e17b1fc5ba3",
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"mem_only_mesmer_filtered.tif:md5,5751b2e39393a9c8221396f5ef592035",
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"mem_only_stardist_filtered.csv:md5,68ab417273f2f77a738891c773eb931a",
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"mem_only_stardist_filtered.tif:md5,0d124514cca74cb809b9adcca4a45e03",
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"mem_only_mesmer_mask.tif:md5,6f8c792ccc4cca97b5696990fb4e3801",
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"mem_only_stardist_mask.tif:md5,527ada48b8127622300952ab163ef0a8",
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"cellxgene_mem_only_cellpose.csv:md5,dc8349194322a72bd87e5118040c427f",
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"cellxgene_mem_only_mesmer.csv:md5,198b187d5f151077437aa591f5991b22",
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"cellxgene_mem_only_stardist.csv:md5,f6cc61b4c21149a65c8f93724c5a5d73"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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},
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"timestamp": "2025-10-26T14:04:45.010875837"
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}
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}

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