Run nf-test

Split PREPARE_GENOME into REFERENCES + INDICES subworkflows #1606

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Run time

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Job	Run time
nf-test-changes	17s
docker \| latest-everything \| 5/20	2m 49s
docker \| latest-everything \| 4/20	3m 0s
docker \| 25.04.3 \| 4/20	2m 51s
docker \| 25.04.3 \| 3/20	2m 47s
docker \| latest-everything \| 3/20	2m 58s
docker \| latest-everything \| 6/20	3m 14s
docker \| 25.04.3 \| 2/20	2m 55s
docker \| latest-everything \| 1/20	2m 50s
docker \| 25.04.3 \| 8/20	2m 59s
docker \| 25.04.3 \| 7/20	2m 58s
docker \| 25.04.3 \| 6/20	2m 51s
docker \| latest-everything \| 8/20	2m 50s
docker \| 25.04.3 \| 5/20	2m 49s
docker \| 25.04.3 \| 10/20	2m 43s
docker \| latest-everything \| 2/20	3m 40s
docker \| latest-everything \| 17/20	2m 52s
docker \| latest-everything \| 7/20	2m 31s
docker \| latest-everything \| 11/20	2m 50s
docker \| 25.04.3 \| 18/20	2m 49s
docker \| latest-everything \| 18/20	3m 2s
docker \| latest-everything \| 9/20	3m 10s
docker \| 25.04.3 \| 13/20	2m 55s
docker \| 25.04.3 \| 15/20	2m 55s
docker \| 25.04.3 \| 12/20	2m 56s
docker \| latest-everything \| 12/20	2m 46s
docker \| 25.04.3 \| 20/20	3m 40s
docker \| latest-everything \| 16/20	2m 51s
docker \| 25.04.3 \| 16/20	2m 48s
docker \| 25.04.3 \| 11/20	2m 50s
docker \| latest-everything \| 19/20	2m 48s
docker \| latest-everything \| 13/20	2m 50s
docker \| 25.04.3 \| 9/20	3m 40s
docker \| 25.04.3 \| 17/20	2m 50s
docker \| 25.04.3 \| 14/20	3m 40s
docker \| latest-everything \| 14/20	2m 52s
docker \| 25.04.3 \| 1/20	2m 42s
docker \| latest-everything \| 10/20	2m 55s
docker \| latest-everything \| 20/20	2m 51s
docker \| 25.04.3 \| 19/20	2m 49s
docker \| latest-everything \| 15/20	3m 40s
confirm-pass	5s
	1h 59m 8s

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