docs(changelog): condense #1680 entry and reorder by PR number

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

Author: pinin4fjords

CHANGELOG.md

@@ -9,14 +9,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Enhancements and fixes
 
+- [PR #1680](https://github.com/nf-core/rnaseq/pull/1680) - Bump Nextflow floor to 25.10.4 and nf-schema to 2.6.1, and resolve v2-parser lint warnings in local + carried nf-core subworkflows
 - [PR #1775](https://github.com/nf-core/rnaseq/pull/1775) - Add Parabricks resource configuration guide for full-size genomes (GPU count, memory scaling, retry strategy, `--low-memory` flag)
 - [PR #1844](https://github.com/nf-core/rnaseq/pull/1844) - Bump version to 3.27.0dev after release 3.26.0; flip the MultiQC report links and RO-Crate URL/version back to dev
 - [PR #1848](https://github.com/nf-core/rnaseq/pull/1848) - Align `actions/checkout` SHA in `nf-test-arm.yml` and `nf-test-gpu.yml` with the template-derived `nf-test.yml` (`v6`) ([#1847](https://github.com/nf-core/rnaseq/issues/1847))
 - [PR #1849](https://github.com/nf-core/rnaseq/pull/1849) - Tidy-up batch addressing [#1845](https://github.com/nf-core/rnaseq/issues/1845): README/schema clarifications, `&` → `&&` in three guards, deduplicated `withName` blocks, and removal of the unmaintained `bin/fastq_dir_to_samplesheet.py` (use [nf-core/fetchngs](https://nf-co.re/fetchngs) for samplesheet generation)
 - [PR #1850](https://github.com/nf-core/rnaseq/pull/1850) - Use the active aligner's display name in the MultiQC `fail_mapped` per-sample status row, and drop the hardcoded "STAR" reference from the pipeline-completion `min_mapped_reads` warning, so Bowtie2 reports no longer mislabel the metric as STAR ([#1846](https://github.com/nf-core/rnaseq/issues/1846))
 - [PR #1851](https://github.com/nf-core/rnaseq/pull/1851) - Split `PREPARE_GENOME` into `PREPARE_GENOME_REFERENCES` (FASTA / GTF / BED / transcript FASTA / chrom.sizes / rRNA / Kraken DB) and `PREPARE_GENOME_INDICES` (per-aligner index build/load) for clearer ownership; no user-facing parameter, output, or behaviour change ([#1721](https://github.com/nf-core/rnaseq/issues/1721)).
 - [PR #1852](https://github.com/nf-core/rnaseq/pull/1852) - Flatten `workflows/rnaseq/assets/` back to top-level `assets/` so `nf-core pipelines bump-version` finds `assets/multiqc_config.yml` and updates the report-comment URLs automatically on release bumps
-- [PR #1680](https://github.com/nf-core/rnaseq/pull/1680) - Strict-syntax compliance: bump `nextflowVersion` floor to `25.10.4` and CI matrix to match (resolves the Seqera plugin registry that hosts `nf-schema` 2.6.x); bump `nf-schema` to 2.6.1 so `validation.defaultIgnoreParams` and `validation.monochromeLogs` are recognised under the v2 parser; replace implicit `it` closure parameters and prefix unused `meta` parameters with `_` across local subworkflows; carry the upstream-merged strict-syntax fixes for `bam_dedup_umi`, `bam_markduplicates_picard`, `bam_qc_rnaseq`, and `fastq_qc_trim_filter_setstrandedness` (proper nf-core resync to follow)
 
 ## [[3.26.0](https://github.com/nf-core/rnaseq/releases/tag/3.26.0)] - 2026-05-07