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modules.json
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207 lines (207 loc) · 9.54 KB
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{
"name": "nf-core/smrnaseq",
"homePage": "https://github.com/nf-core/smrnaseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bioawk": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"],
"patch": "modules/nf-core/bioawk/bioawk.diff"
},
"blat": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"bowtie/align": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"bowtie/build": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "d9ec4ef289ad39b8a662a7a12be50409b11df84b",
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"fastqc": {
"branch": "master",
"git_sha": "5cb9a8694da0a0e550921636bb60bc8c56445fd7",
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"gawk": {
"branch": "master",
"git_sha": "5ee4d69ed992c3ce81cfbbdd0bef932fcb81c75a",
"installed_by": ["modules"]
},
"mirdeep2/mapper": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"mirdeep2/mirdeep2": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"mirtop/counts": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/export": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/gff": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/stats": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtrace/qc": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "9656d955b700a8707c4a67821ab056f8c1095675",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "e334e12a1e985adc5ffc3fc78a68be1de711de45",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "c8be52dba1166c678e74cda9c3a3c221635c8bb1",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "5cb9a8694da0a0e550921636bb60bc8c56445fd7",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "5cb9a8694da0a0e550921636bb60bc8c56445fd7",
"installed_by": ["bam_stats_samtools"]
},
"seqcluster/collapse": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"seqkit/fq2fa": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"seqkit/grep": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["modules"]
},
"seqkit/replace": {
"branch": "master",
"git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"umicollapse": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["modules"]
},
"umitools/extract": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"untar": {
"branch": "master",
"git_sha": "00ee87ebb541af0008596400ce6d5f66d79d5408",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "0b2435805036a16dcdcf21533632d956b8273ac4",
"installed_by": ["subworkflows"]
},
"bam_stats_mirna_mirtop": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "0b2435805036a16dcdcf21533632d956b8273ac4",
"installed_by": ["bam_sort_stats_samtools"]
},
"fastq_fastqc_umitools_fastp": {
"branch": "master",
"git_sha": "0b2435805036a16dcdcf21533632d956b8273ac4",
"installed_by": ["subworkflows"]
},
"fastq_find_mirna_mirdeep2": {
"branch": "master",
"git_sha": "60645c2b45e56579de0a0c89416805cae44c1f46",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "df4d1c8cdee98a1bbbed8fc51e82296568e0f9c1",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
"installed_by": ["subworkflows"]
}
}
}
}
}
}