uppmax.config

/*
 * -------------------------------------------------
 *  Nextflow config file for UPPMAX (milou / irma)
 * -------------------------------------------------
 * Defines reference genomes, using iGenome paths
 * Imported under the default 'standard' Nextflow
 * profile in nextflow.config
 */

singularity {
  enabled = true
}

process {
  executor = 'slurm'
  clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
}

params {
  saveReference = true
  // Max resources requested by a normal node on milou. If you need more memory, run on a fat node using:
  //   --clusterOptions "-C mem512GB" --max_memory "512GB"
  max_memory = 128.GB
  max_cpus = 16
  max_time = 240.h
  // illumina iGenomes reference file paths on UPPMAX
  igenomes_base = '/sw/data/uppnex/igenomes/'
}