ext/pymongo: Add instrumentor (#612)

The current Pymongo integration uses the monitoring.register() [1] to hook
the different internal calls of Pymongo. This integration doesn't allow to
unregister a monitor. This commit workaround that limitation by adding an
enable flag to the CommandTracer class and adds a logic to disable the
integration.  This solution is not perfect becasue there will be some overhead
even when the instrumentation is disabled, but that's what we can do with
the current approach.

[1] https://api.mongodb.com/python/current/api/pymongo/monitoring.html#pymongo.monitoring.register

Co-authored-by: Alex Boten <aboten@lightstep.com>

Author: mauriciovasquezbernal

ext/opentelemetry-ext-docker-tests/tests/pymongo/test_pymongo_functional.py

@@ -17,7 +17,7 @@
 from pymongo import MongoClient
 
 from opentelemetry import trace as trace_api
-from opentelemetry.ext.pymongo import trace_integration
+from opentelemetry.ext.pymongo import PymongoInstrumentor
 from opentelemetry.test.test_base import TestBase
 
 MONGODB_HOST = os.getenv("MONGODB_HOST ", "localhost")
@@ -31,7 +31,7 @@ class TestFunctionalPymongo(TestBase):
     def setUpClass(cls):
         super().setUpClass()
         cls._tracer = cls.tracer_provider.get_tracer(__name__)
-        trace_integration(cls.tracer_provider)
+        PymongoInstrumentor().instrument()
         client = MongoClient(
             MONGODB_HOST, MONGODB_PORT, serverSelectionTimeoutMS=2000
         )
@@ -94,3 +94,23 @@ def test_delete(self):
         with self._tracer.start_as_current_span("rootSpan"):
             self._collection.delete_one({"name": "testName"})
         self.validate_spans()
+
+    def test_uninstrument(self):
+        # check that integration is working
+        self._collection.find_one()
+        spans = self.memory_exporter.get_finished_spans()
+        self.memory_exporter.clear()
+        self.assertEqual(len(spans), 1)
+
+        # uninstrument and check not new spans are created
+        PymongoInstrumentor().uninstrument()
+        self._collection.find_one()
+        spans = self.memory_exporter.get_finished_spans()
+        self.memory_exporter.clear()
+        self.assertEqual(len(spans), 0)
+
+        # re-enable and check that it works again
+        PymongoInstrumentor().instrument()
+        self._collection.find_one()
+        spans = self.memory_exporter.get_finished_spans()
+        self.assertEqual(len(spans), 1)

ext/opentelemetry-ext-pymongo/CHANGELOG.md

@@ -2,6 +2,9 @@
 
 ## Unreleased
 
+- Implement instrumentor interface ([#612](https://github.com/open-telemetry/opentelemetry-python/pull/612))
+
+
 ## 0.4a0
 
 Released 2020-02-21

ext/opentelemetry-ext-pymongo/setup.cfg

@@ -41,6 +41,7 @@ package_dir=
 packages=find_namespace:
 install_requires =
     opentelemetry-api == 0.7.dev0
+    opentelemetry-auto-instrumentation == 0.7.dev0
     pymongo ~= 3.1
 
 [options.extras_require]
@@ -49,3 +50,7 @@ test =
 
 [options.packages.find]
 where = src
+
+[options.entry_points]
+opentelemetry_instrumentor =
+    pymongo = opentelemetry.ext.pymongo:PymongoInstrumentor

ext/opentelemetry-ext-pymongo/src/opentelemetry/ext/pymongo/__init__.py

@@ -13,8 +13,8 @@
 # limitations under the License.
 
 """
-The integration with MongoDB supports the `pymongo`_ library and is specified
-to ``trace_integration`` using ``'pymongo'``.
+The integration with MongoDB supports the `pymongo`_ library, it can be
+enabled using the ``PymongoInstrumentor``.
 
 .. _pymongo: https://pypi.org/project/pymongo
 
@@ -26,11 +26,11 @@
     from pymongo import MongoClient
     from opentelemetry import trace
     from opentelemetry.trace import TracerProvider
-    from opentelemetry.trace.ext.pymongo import trace_integration
+    from opentelemetry.trace.ext.pymongo import PymongoInstrumentor
 
     trace.set_tracer_provider(TracerProvider())
 
-    trace_integration()
+    PymongoInstrumentor().instrument()
     client = MongoClient()
     db = client["MongoDB_Database"]
     collection = db["MongoDB_Collection"]
@@ -42,6 +42,8 @@
 
 from pymongo import monitoring
 
+from opentelemetry import trace
+from opentelemetry.auto_instrumentation.instrumentor import BaseInstrumentor
 from opentelemetry.ext.pymongo.version import __version__
 from opentelemetry.trace import SpanKind, get_tracer
 from opentelemetry.trace.status import Status, StatusCanonicalCode
@@ -50,27 +52,16 @@
 COMMAND_ATTRIBUTES = ["filter", "sort", "skip", "limit", "pipeline"]
 
 
-def trace_integration(tracer_provider=None):
-    """Integrate with pymongo to trace it using event listener.
-       https://api.mongodb.com/python/current/api/pymongo/monitoring.html
-
-    Args:
-        tracer_provider: The `TracerProvider` to use. If none is passed the
-            current configured one is used.
-    """
-
-    tracer = get_tracer(__name__, __version__, tracer_provider)
-
-    monitoring.register(CommandTracer(tracer))
-
-
 class CommandTracer(monitoring.CommandListener):
     def __init__(self, tracer):
         self._tracer = tracer
         self._span_dict = {}
+        self.is_enabled = True
 
     def started(self, event: monitoring.CommandStartedEvent):
         """ Method to handle a pymongo CommandStartedEvent """
+        if not self.is_enabled:
+            return
         command = event.command.get(event.command_name, "")
         name = DATABASE_TYPE + "." + event.command_name
         statement = event.command_name
@@ -103,38 +94,70 @@ def started(self, event: monitoring.CommandStartedEvent):
             if span is not None:
                 span.set_status(Status(StatusCanonicalCode.INTERNAL, str(ex)))
                 span.end()
-                self._remove_span(event)
+                self._pop_span(event)
 
     def succeeded(self, event: monitoring.CommandSucceededEvent):
         """ Method to handle a pymongo CommandSucceededEvent """
-        span = self._get_span(event)
-        if span is not None:
-            span.set_attribute(
-                "db.mongo.duration_micros", event.duration_micros
-            )
-            span.set_status(Status(StatusCanonicalCode.OK, event.reply))
-            span.end()
-            self._remove_span(event)
+        if not self.is_enabled:
+            return
+        span = self._pop_span(event)
+        if span is None:
+            return
+        span.set_attribute("db.mongo.duration_micros", event.duration_micros)
+        span.set_status(Status(StatusCanonicalCode.OK, event.reply))
+        span.end()
 
     def failed(self, event: monitoring.CommandFailedEvent):
         """ Method to handle a pymongo CommandFailedEvent """
-        span = self._get_span(event)
-        if span is not None:
-            span.set_attribute(
-                "db.mongo.duration_micros", event.duration_micros
-            )
-            span.set_status(Status(StatusCanonicalCode.UNKNOWN, event.failure))
-            span.end()
-            self._remove_span(event)
-
-    def _get_span(self, event):
-        return self._span_dict.get(_get_span_dict_key(event))
+        if not self.is_enabled:
+            return
+        span = self._pop_span(event)
+        if span is None:
+            return
+        span.set_attribute("db.mongo.duration_micros", event.duration_micros)
+        span.set_status(Status(StatusCanonicalCode.UNKNOWN, event.failure))
+        span.end()
 
-    def _remove_span(self, event):
-        self._span_dict.pop(_get_span_dict_key(event))
+    def _pop_span(self, event):
+        return self._span_dict.pop(_get_span_dict_key(event), None)
 
 
 def _get_span_dict_key(event):
     if event.connection_id is not None:
         return (event.request_id, event.connection_id)
     return event.request_id
+
+
+class PymongoInstrumentor(BaseInstrumentor):
+    _commandtracer_instance = None  # type CommandTracer
+    # The instrumentation for PyMongo is based on the event listener interface
+    # https://api.mongodb.com/python/current/api/pymongo/monitoring.html.
+    # This interface only allows to register listeners and does not provide
+    # an unregister API. In order to provide a mechanishm to disable
+    # instrumentation an enabled flag is implemented in CommandTracer,
+    # it's checked in the different listeners.
+
+    def _instrument(self, **kwargs):
+        """Integrate with pymongo to trace it using event listener.
+        https://api.mongodb.com/python/current/api/pymongo/monitoring.html
+
+        Args:
+            tracer_provider: The `TracerProvider` to use. If none is passed the
+                current configured one is used.
+        """
+
+        tracer_provider = kwargs.get("tracer_provider")
+
+        # Create and register a CommandTracer only the first time
+        if self._commandtracer_instance is None:
+            tracer = get_tracer(__name__, __version__, tracer_provider)
+
+            self._commandtracer_instance = CommandTracer(tracer)
+            monitoring.register(self._commandtracer_instance)
+
+        # If already created, just enable it
+        self._commandtracer_instance.is_enabled = True
+
+    def _uninstrument(self, **kwargs):
+        if self._commandtracer_instance is not None:
+            self._commandtracer_instance.is_enabled = False

ext/opentelemetry-ext-pymongo/tests/test_pymongo.py

@@ -15,7 +15,7 @@
 from unittest import mock
 
 from opentelemetry import trace as trace_api
-from opentelemetry.ext.pymongo import CommandTracer, trace_integration
+from opentelemetry.ext.pymongo import CommandTracer, PymongoInstrumentor
 from opentelemetry.test.test_base import TestBase
 
 
@@ -24,13 +24,13 @@ def setUp(self):
         super().setUp()
         self.tracer = self.tracer_provider.get_tracer(__name__)
 
-    def test_trace_integration(self):
+    def test_pymongo_instrumentor(self):
         mock_register = mock.Mock()
         patch = mock.patch(
             "pymongo.monitoring.register", side_effect=mock_register
         )
         with patch:
-            trace_integration(self.tracer_provider)
+            PymongoInstrumentor().instrument()
 
         self.assertTrue(mock_register.called)
 
@@ -50,7 +50,7 @@ def test_started(self):
         # the memory exporter can't be used here because the span isn't ended
         # yet
         # pylint: disable=protected-access
-        span = command_tracer._get_span(mock_event)
+        span = command_tracer._pop_span(mock_event)
         self.assertIs(span.kind, trace_api.SpanKind.CLIENT)
         self.assertEqual(span.name, "mongodb.command_name.find")
         self.assertEqual(span.attributes["component"], "mongodb")

tox.ini

@@ -177,6 +177,7 @@ commands_pre =
 
   prometheus: pip install {toxinidir}/ext/opentelemetry-ext-prometheus
 
+  pymongo: pip install {toxinidir}/opentelemetry-auto-instrumentation
   pymongo: pip install {toxinidir}/ext/opentelemetry-ext-pymongo[test]
 
   psycopg2: pip install {toxinidir}/ext/opentelemetry-ext-dbapi