integration test #1267

Run time

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Job	Run time
sync_s3	5m 45s
build / Build and push target folder	4m 13s
build / onclass - annotate - Build and push docker image	11m 5s
build / scanvi - annotate - Build and push docker image	4m 43s
build / from_h5mu_to_h5ad - convert - Build and push docker image	2m 56s
build / celltypist - annotate - Build and push docker image	6m 15s
build / popv - annotate - Build and push docker image	6m 36s
build / compress_h5mu - compression - Build and push docker image	2m 37s
build / singler - annotate - Build and push docker image	3m 33s
build / from_10xh5_to_h5mu - convert - Build and push docker image	2m 30s
build / from_10xmtx_to_h5mu - convert - Build and push docker image	2m 49s
build / tar_extract - compression - Build and push docker image	1m 9s
build / from_h5ad_to_seurat - convert - Build and push docker image	2m 37s
build / svm_annotation - annotate - Build and push docker image	2m 27s
build / from_h5ad_to_h5mu - convert - Build and push docker image	1m 32s
build / from_bdrhap_to_h5mu - convert - Build and push docker image	2m 33s
build / consensus_vote - annotate - Build and push docker image	1m 40s
build / from_cellranger_multi_to_h5mu - convert - Build and push docker image	3m 12s
build / from_h5mu_or_h5ad_to_tiledb - convert - Build and push docker image	3m 39s
build / from_bd_to_10x_molecular_barcode_tags - convert - Build and push docker image	1m 37s
build / leiden - cluster - Build and push docker image	2m 47s
build / from_h5mu_to_seurat - convert - Build and push docker image	3m 46s
build / from_h5mu_or_h5ad_to_seurat - convert - Build and push docker image	3m 52s
build / random_forest_annotation - annotate - Build and push docker image	3m 8s
build / bcl2fastq - demux - Build and push docker image	1m 25s
build / merge - dataflow - Build and push docker image	2m 16s
build / concatenate_h5mu - dataflow - Build and push docker image	2m 34s
build / from_seurat_to_h5mu - convert - Build and push docker image	3m 42s
build / cellbender_remove_background - correction - Build and push docker image	9m 5s
build / cellranger_atac_mkfastq - demux - Build and push docker image	2m 47s
build / deseq2 - differential_expression - Build and push docker image	2m 21s
build / pca - dimred - Build and push docker image	3m 24s
build / cellranger_mkfastq - demux - Build and push docker image	4m 30s
build / make_params - files - Build and push docker image	2m 55s
build / create_pseudobulk - differential_expression - Build and push docker image	3m 6s
build / split_h5mu - dataflow - Build and push docker image	5m 39s
build / highly_variable_features_scanpy - feature_annotation - Build and push docker image	3m 34s
build / intersect_obs - filter - Build and push docker image	3m 38s
build / delimit_fraction - filter - Build and push docker image	2m 22s
build / delimit_counts - filter - Build and push docker image	3m 6s
build / bcl_convert - demux - Build and push docker image	1m 7s
build / densmap - dimred - Build and push docker image	3m 32s
build / align_query_reference - feature_annotation - Build and push docker image	2m 25s
build / download_file - download - Build and push docker image	2m 6s
build / score_genes_cell_cycle_scanpy - feature_annotation - Build and push docker image	3m 15s
build / filter_with_pattern - filter - Build and push docker image	2m 18s
build / filter_with_scrublet - filter - Build and push docker image	3m 45s
build / split_modalities - dataflow - Build and push docker image	2m 46s
build / lsi - dimred - Build and push docker image	2m 49s
build / filter_with_quantile - filter - Build and push docker image	3m 5s
build / score_genes_scanpy - feature_annotation - Build and push docker image	2m 8s
build / tsne - dimred - Build and push docker image	2m 56s
build / from_tiledb_to_h5mu - convert - Build and push docker image	3m 46s
build / remove_modality - filter - Build and push docker image	2m 30s
build / umap - dimred - Build and push docker image	3m 29s
build / filter_with_counts - filter - Build and push docker image	3m 51s
build / do_filter - filter - Build and push docker image	1m 26s
build / subset_h5mu - filter - Build and push docker image	2m 50s
build / subset_obsp - filter - Build and push docker image	2m 37s
build / bcftools - genetic_demux - Build and push docker image	4m 28s
build / cellmapper - labels_transfer - Build and push docker image	3m 53s
build / scvi - integrate - Build and push docker image	4m 41s
build / cellsnp - genetic_demux - Build and push docker image	4m 21s
build / lianapy - interpret - Build and push docker image	2m 33s
build / knn - labels_transfer - Build and push docker image	2m 49s
build / totalvi_scarches - integrate - Build and push docker image	4m 40s
build / move_obsm_to_obs - metadata - Build and push docker image	2m 29s
build / filter_10xh5 - process_10xh5 - Build and push docker image	3m 53s
build / dsc_pileup - genetic_demux - Build and push docker image	5m 4s
build / calculate_qc_metrics - qc - Build and push docker image	2m 56s
build / join_csv - metadata - Build and push docker image	2m 38s
build / build_bdrhap_reference - reference - Build and push docker image	2m 8s
build / join_uns_to_obs - metadata - Build and push docker image	1m 43s
build / star_align_v273a - mapping - Build and push docker image	3m 46s
build / find_neighbors - neighbors - Build and push docker image	3m 32s
build / multiqc - qc - Build and push docker image	2m 32s
build / demuxlet - genetic_demux - Build and push docker image	7m 52s
build / bd_rhapsody - mapping - Build and push docker image	1m 57s
build / harmonypy - integrate - Build and push docker image	2m 28s
build / cellranger_count_split - mapping - Build and push docker image	1m 56s
build / htseq_count_to_h5mu - mapping - Build and push docker image	7m 25s
build / vireo - genetic_demux - Build and push docker image	2m 28s
build / scarches - integrate - Build and push docker image	4m 25s
build / scsplit - genetic_demux - Build and push docker image	2m 11s
build / build_cellranger_arc_reference - reference - Build and push docker image	2m 51s
build / samtools - genetic_demux - Build and push docker image	4m 21s
build / move_mudata_obsp_to_tiledb - tiledb - Build and push docker image	4m 5s
build / cellranger_mkgtf - reference - Build and push docker image	2m 43s
build / xgboost - labels_transfer - Build and push docker image	4m 18s
build / scanorama - integrate - Build and push docker image	3m 22s
build / freebayes - genetic_demux - Build and push docker image	2m 59s
build / star_align - mapping - Build and push docker image	5m 30s
build / cellranger_count - mapping - Build and push docker image	3m 4s
build / bbknn - neighbors - Build and push docker image	2m 30s
build / cellxgene_census - query - Build and push docker image	3m 59s
build / build_star_reference - reference - Build and push docker image	4m 39s
build / add_id - metadata - Build and push docker image	3m 20s
build / souporcell - genetic_demux - Build and push docker image	9m 10s
build / multi_star - mapping - Build and push docker image	5m 57s
build / cellranger_atac_count - mapping - Build and push docker image	4m 3s
build / samtools_sort - mapping - Build and push docker image	2m 39s
build / build_cellranger_reference - reference - Build and push docker image	3m 13s
build / tiledb_healthcheck - query - Build and push docker image	4m 49s
build / velocyto - velocity - Build and push docker image	3m 42s
build / htseq_count - mapping - Build and push docker image	2m 42s
build / grep_annotation_column - metadata - Build and push docker image	2m 27s
build / multi_star_to_h5mu - mapping - Build and push docker image	2m 55s
build / calculate_atac_qc_metrics - qc - Build and push docker image	4m 10s
build / cellranger_multi - mapping - Build and push docker image	2m 58s
build / bpcells_regress_out - transform - Build and push docker image	10m 59s
build / clear_slots - transform - Build and push docker image	1m 43s
build / tfidf - transform - Build and push docker image	4m 31s
build / move_mudata_obsm_to_tiledb - tiledb - Build and push docker image	3m 48s
build / move_mudata_obs_to_tiledb - tiledb - Build and push docker image	3m 34s
build / mermaid - report - Build and push docker image	3m 8s
build / fastqc - qc - Build and push docker image	2m 3s
build / totalvi - integrate - Build and push docker image	5m 39s
build / delete_layer - transform - Build and push docker image	2m 20s
build / freemuxlet - genetic_demux - Build and push docker image	9m 42s
build / scale - transform - Build and push docker image	3m 3s
build / velocyto_to_h5mu - convert - Build and push docker image	6m 8s
build / normalize_total - transform - Build and push docker image	3m 9s
build / regress_out - transform - Build and push docker image	3m 2s
build / make_reference - reference - Build and push docker image	1m 11s
build / move_layer - transform - Build and push docker image	2m 12s
build / clr - transform - Build and push docker image	2m 26s
build / log1p - transform - Build and push docker image	2m 36s
build / scvelo - velocity - Build and push docker image	3m 5s
integration_test	0s
	7h 35m 39s

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integration test #1267

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integration test #1267

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Run time