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    20 repositories

    • Giess_2026

      Public
      📦 - Supporting information and notebooks to "FAIR NMR: acquisition, processing, and modelling of time-resolved NMR data according to the FAIR principles"
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • enzymeml-specifications

      Public
      📖 - Formal definition of EnzymeML in various schema languages as well as APIs in various programming languages
      dataschemafair
      dataschemafairkinetic-modelingbiocatalysisenzymeml
      2•5•3•0•Updated Mar 20, 2026Mar 20, 2026

    • enzymeml-suite

      Public
      🧬 - A graphical user interface for the EnzymeML community standard
      rustdatabaseresearch-data-management
      rustdatabaseresearch-data-managementmetadata-extractiongraphical-user-interfacetaurienzymestypescript-reactenzyme-kineticslarge-language-models
      TypeScript
      •0•0•3•2•Updated Mar 11, 2026Mar 11, 2026

    • enzymeml-go

      Public
      🧬 - Spin up EnzymeML databases
      Go
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • EnzymeML.jl

      Public
      🧬 - EnzymeML integrations to the Julia eco-system
      Julia
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • PyEnzyme

      Public
      🧬 - Data management and modeling framework based on EnzymeML.
      Python
      •
      BSD 2-Clause "Simplified" License
      •8•26•7•1•Updated Feb 23, 2026Feb 23, 2026

    • enzymeml-mcp

      Public
      MCP server that provides comprehensive tools for interacting with EnzymeML documents through the EnzymeML Suite desktop application
      Rust
      •0•0•0•0•Updated Jan 18, 2026Jan 18, 2026

    • enzymeml-rs

      Public
      🧬 - Data management and modeling framework based on EnzymeML.
      Rust
      •
      MIT License
      •0•2•0•1•Updated Jan 16, 2026Jan 16, 2026

    • .github

      Public
      MIT License
      •0•0•0•0•Updated Oct 5, 2025Oct 5, 2025

    • enzymeml-ts

      Public
      🧬 - EnzymeML types, zod schemes and database fetchers
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Sep 28, 2025Sep 28, 2025

    • Range_2025

      Public
      📄 - Supporting information for the Range et. al paper on MD-Models
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

    • libsbml-rs

      Public
      ⚙️ - A Rust library to handle SBML documents
      Rust
      •
      GNU Lesser General Public License v3.0
      •0•3•2•0•Updated Jul 18, 2025Jul 18, 2025

    • EnzymeML-Schema

      Public archive
      0•2•1•0•Updated Mar 6, 2025Mar 6, 2025

    • trainingcourse_website

      Public
      Website of the EnzymeML Training Course
      Jupyter Notebook
      •
      MIT License
      •0•0•1•0•Updated Feb 10, 2025Feb 10, 2025

    • strenda-specifications

      Public
      Jupyter Notebook
      •1•0•1•1•Updated Sep 25, 2024Sep 25, 2024

    • slac_modeling

      Public
      📕 - Kinetic modeling workflow
      modelingenzyme-kineticsbiocatalysis
      modelingenzyme-kineticsbiocatalysis
      Jupyter Notebook
      •0•0•0•0•Updated Jan 8, 2024Jan 8, 2024

    • enzymeml.github.io

      Public
      EnzymeML GitHub pages
      HTML
      •1•0•1•0•Updated Sep 29, 2023Sep 29, 2023

    • Lauterbach_2022

      Public
      📦 - Supporting information and notebooks to "EnzymeML: seamless data flow and modeling of enzymatic data"
      notebookjupyter-notebook
      notebookjupyter-notebook
      Jupyter Notebook
      •3•1•0•0•Updated Apr 11, 2022Apr 11, 2022

    • Dienhart_2022

      Public
      This repository contains the written report of the master thesis 'FAIR modelling of enzyme kinetics by EnzymeML and Jupyter Notebooks' as a Jupyter Book
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Jan 26, 2022Jan 26, 2022

    • workflow-jupyter-notebooks

      Public
      This repository extends the EnzymeML project by providing Jupyter notebooks for data management of EnzymeML documents. Such as workflows for visualization, kine…
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •0•2•0•0•Updated Jul 22, 2021Jul 22, 2021
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