Skip to content

@bozdaglab bozdaglab

Change the repository type filter

All

    Repositories list

    34 repositories

    • HINN

      Public
      Hierarchical Input Neural Network with sample data.
      Python
      •1•2•0•1•Updated Apr 13, 2026Apr 13, 2026

    • CLEAR

      Public
      Contextualizing LLM Embeddings via Attention-based gRaph Learning
      Python
      •
      Other
      •1•2•0•0•Updated Mar 13, 2026Mar 13, 2026

    • AD_sMCI_vs_pMCI

      Public
      This repository discusses the analysis and pre-processing details of stable MCI (sMCI) vs. progressive MCI (pMCI) classification.
      Python
      •
      Other
      •0•1•1•0•Updated Feb 26, 2026Feb 26, 2026

    • BioLM-NET

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Feb 3, 2026Feb 3, 2026

    • DyGraphTrans

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Jan 27, 2026Jan 27, 2026

    • scAURA

      Public
      clustering method for single-cell transcriptomics data
      Python
      •
      Other
      •0•10•1•0•Updated Jan 24, 2026Jan 24, 2026

    • MultiGEOmics

      Public
      Python
      •
      Other
      •1•2•0•0•Updated Jan 22, 2026Jan 22, 2026

    • CAAT-EHR

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Jan 20, 2026Jan 20, 2026

    • DyGSSM

      Public
      Python
      •
      Other
      •1•0•1•1•Updated Sep 16, 2025Sep 16, 2025

    • Top_DTI

      Public
      Jupyter Notebook
      •
      Other
      •3•5•0•0•Updated May 13, 2025May 13, 2025

    • ProtFun

      Public
      Jupyter Notebook
      •
      Other
      •2•12•1•0•Updated May 13, 2025May 13, 2025

    • IGCN

      Public
      Python
      •
      Other
      •2•6•0•1•Updated May 5, 2025May 5, 2025

    • CanMod2

      Public
      R
      •
      Other
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • DyEPAD

      Public
      Dynamic GNN framekwork to predict progression of Alzheimer's Disease
      Python
      •
      Other
      •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

    • TA-RNN

      Public
      Jupyter Notebook
      •
      Other
      •1•4•0•0•Updated Jul 1, 2024Jul 1, 2024

    • PPAD

      Public
      Predicting Progression of Alzheimer’s Disease
      Jupyter Notebook
      •
      Other
      •0•6•2•0•Updated Jan 10, 2024Jan 10, 2024

    • GRAF

      Public
      Python
      •
      Other
      •1•10•0•0•Updated Aug 23, 2023Aug 23, 2023

    • SUPREME

      Public
      SUPREME: A GCN based approach for cancer subtype prediction
      Python
      •
      Other
      •7•18•0•0•Updated Aug 9, 2023Aug 9, 2023

    • NRPreTo

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Nov 15, 2022Nov 15, 2022

    • CTDPathSim2.0

      Public
      An R package for computing the similarity scores between patient tumor samples and cancer cell lines at genetic, genomic, and epigenetic levels integrating mult…
      R
      •
      Other
      •0•2•0•0•Updated Apr 13, 2022Apr 13, 2022

    • CTDPathSim

      Public
      CTDPathSim: Cell line-tumor deconvoluted pathway-based similarity in the context of precision medicine in cancer
      R
      •
      Other
      •2•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • miRDriver

      Public
      A computational tool to infer copy number derived miRNA-gene networks in cancer.
      R
      •
      MIT License
      •1•1•0•0•Updated Jan 31, 2022Jan 31, 2022

    • PhenoGeneRanker

      Public
      Bioconductor package for PhenoGeneRanker
      R
      •1•0•0•1•Updated Nov 15, 2021Nov 15, 2021

    • crinet

      Public
      Competing endogenous RNA (ceRNA) network inference tool
      R
      •
      Other
      •1•3•0•0•Updated Sep 23, 2021Sep 23, 2021

    • PDDRNet-MH

      Public
      Patient-derived drug response prediction tool.
      0•0•0•0•Updated Mar 15, 2021Mar 15, 2021

    • CanMod

      Public
      A computational tool to infer gene regulatory modules in cancer
      R
      •
      Other
      •0•2•0•0•Updated Nov 21, 2020Nov 21, 2020

    • NECo

      Public
      R
      •0•3•0•0•Updated Sep 2, 2020Sep 2, 2020

    • miRDriver-Datasets

      Public
      Datasets to run miRDriver
      Other
      •0•0•0•0•Updated Jul 17, 2020Jul 17, 2020

    • PhenoGeneRankerTool

      Public
      R
      •2•0•0•0•Updated May 28, 2019May 28, 2019

    • Cancerin

      Public
      Computational method to infer cancer-associated ceRNA interaction networks
      R
      •
      MIT License
      •1•2•1•0•Updated Apr 28, 2019Apr 28, 2019
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.
    ⚡