Skip to content

@cas-bioinf Bioinformatics @ Institute of Microbiology of the Czech Academy of Sciences

Change the repository type filter

All

    Repositories list

    19 repositories

    • statistical-simulations

      Public
      A collection of small notebooks showing some statistical properties via simulation
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Feb 5, 2026Feb 5, 2026

    • NblockMatcher

      Public
      Find compatible motif sites
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • RibosomeProfiling

      Public
      Methods and scripts that we use for analyzing RiboSeq data
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • Scoe_SigE_ChIP-seq

      Public
      Code for Streptomyces coelicolor SigE ChIP-seq motif analysis
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • prpf8

      Public
      biostatisticsrt-pcrprpf8
      biostatisticsrt-pcrprpf8
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 31, 2023Mar 31, 2023

    • SBCDeseq2

      Public
      Simulation-based calibration of DESeq2 results
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • rboAnalyzer

      Public
      Tool for analysing BLAST output for ncRNA sequences
      rnablastrna-structure-prediction
      rnablastrna-structure-predictionblast-search
      Python
      •
      GNU General Public License v2.0
      •2•2•0•0•Updated May 19, 2022May 19, 2022

    • web-core-facility

      Public
      Web site of the bioinformatics core facility at IMIC CAS
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 6, 2022May 6, 2022

    • covid19retrospective

      Public
      R
      •
      Other
      •0•10•0•0•Updated Sep 7, 2021Sep 7, 2021

    • metagenboot

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • chrnb2_striatum

      Public
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 7, 2021Jan 7, 2021

    • nanotubes-death

      Public
      Supplementary statistical analysis for the paper "Bacterial nanotubes are a manifestation of cell death"
      Apache License 2.0
      •0•0•0•0•Updated Aug 25, 2020Aug 25, 2020

    • community

      Public
      Common resources for bioinformatics community in Prague
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated May 17, 2019May 17, 2019

    • genexpi

      Public
      Gene Network Inference from Expression Time Series
      time-seriesgene-expressioncytoscape
      time-seriesgene-expressioncytoscapegene-network-inference
      HTML
      •
      GNU Lesser General Public License v3.0
      •1•2•0•0•Updated Feb 12, 2019Feb 12, 2019

    • helD

      Public
      MIT License
      •0•0•0•0•Updated Oct 5, 2018Oct 5, 2018

    • genexpi-stan

      Public
      A Bayesian model of gene regulation
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Sep 4, 2018Sep 4, 2018

    • cy-dataseries

      Public
      A Cytoscape plugin for handling series of data (time series, repeated measurements, ...)
      Java
      •
      GNU Lesser General Public License v3.0
      •1•3•8•0•Updated Apr 18, 2018Apr 18, 2018

    • suboptimalstructures

      Public
      WIP webserver for an RNA analysis tool - finding homologs through suboptimal structures.
      Elm
      •
      GNU Lesser General Public License v3.0
      •0•1•0•0•Updated Dec 19, 2017Dec 19, 2017

    • bsubtilis-web

      Public
      Web visualisation of the regulatory network of Bacillus subtilis determined in our research.
      JavaScript
      •0•0•0•0•Updated Jan 23, 2017Jan 23, 2017
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.
    ⚡