Open Problems in Single-Cell Analysis

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30 packages

dimensionality_reduction/methods/pca
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/pca

82
predict_modality/methods/simplemlp_train
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/methods/simplemlp_train

82
spatially_variable_genes/methods/spark
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spark

82
batch_integration/control_methods/random_integration/global_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/random_integration/global_feature

82
spatially_variable_genes/control_methods/true_ranking
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/control_methods/true_ranking

82
common/decompress_gzip
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/decompress_gzip

81
datasets/loaders/openproblems_neurips2021_bmmc
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/openproblems_neurips2021_bmmc

81
reporting/get_dataset_info
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_dataset_info

80
datasets/loaders/zenodo_spatial_slidetags
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/zenodo_spatial_slidetags

79
reporting/get_metric_info
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_metric_info

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batch_integration/methods/scanorama_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scanorama_feature

79
spatial_decomposition/methods/tangram
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/methods/tangram

79
dimensionality_reduction/methods/diffusion_map
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/diffusion_map

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spatial_decomposition/metrics/r2
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/metrics/r2

79
datasets/loaders/openproblems_v1
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/openproblems_v1

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reporting/get_results
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_results

78
reporting/get_method_info
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/reporting/get_method_info

77
common/process_task_results/get_method_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/get_method_info

76
label_projection/metrics/f1
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/label_projection/metrics/f1

76
batch_integration/metrics/graph_connectivity
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/graph_connectivity

76
batch_integration/control_methods/random_integration/batch_embed
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/random_integration/batch_embed

76
label_projection/methods/logistic_regression
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/label_projection/methods/logistic_regression

76
spatial_decomposition/methods/cell2location
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/methods/cell2location

76
spatially_variable_genes/methods/spark_x
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spark_x

76
predict_modality/metrics/correlation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/metrics/correlation

76
batch_integration/methods/scvi
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scvi

76
common/sync_test_resources
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/sync_test_resources

75
datasets/loaders/multimodal/openproblems_v1_multimodal
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/multimodal/openproblems_v1_multimodal

75
batch_integration/control_methods/perfect_integration/celltype_jitter_embed
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/perfect_integration/celltype_jitter_embed

73
common/process_task_results/get_task_info
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/get_task_info

73

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