Open Problems in Single-Cell Analysis

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30 packages

metrics/similarity
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/metrics/similarity

1.75k
methods_cell_type_annotation/ssam
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_cell_type_annotation/ssam

1.13k
methods_count_aggregation/basic_count_aggregation
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_count_aggregation/basic_count_aggregation

937
methods_qc_filter/basic_qc_filter
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_qc_filter/basic_qc_filter

883
methods_calculate_cell_volume/alpha_shapes
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_calculate_cell_volume/alpha_shapes

838
methods_transcript_assignment/basic_transcript_assignment
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/basic_transcript_assignment

794
methods_normalization/normalize_by_volume
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_normalization/normalize_by_volume

768
methods_expression_correction/no_correction
Published Sep 21, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_expression_correction/no_correction

765
methods_data_aggregation/aggregate_spatial_data
Published Oct 18, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_data_aggregation/aggregate_spatial_data

745
metrics/quality
Published Oct 18, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/metrics/quality

723
methods_transcript_assignment/pciseq
Published Sep 14, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/pciseq

669
methods_transcript_assignment/baysor
Published Sep 13, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/baysor

652
methods_cell_type_annotation/tacco
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_cell_type_annotation/tacco

610
data_processors/process_dataset
Published Aug 30, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/data_processors/process_dataset

527
methods_expression_correction/resolvi_correction
Published Mar 18, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_expression_correction/resolvi_correction

486
methods_transcript_assignment/clustermap
Published Sep 14, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/clustermap

484
methods_normalization/spanorm
Published Jul 9, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_normalization/spanorm

427
methods_expression_correction/gene_efficiency_correction
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_expression_correction/gene_efficiency_correction

415
methods_cell_type_annotation/moscot
Published Mar 12, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_cell_type_annotation/moscot

408
methods_segmentation/watershed
Published Mar 10, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/watershed

401
control_methods/identity
Published Sep 13, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/control_methods/identity

370
control_methods/permute_celltype_annotations
Published Sep 13, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/control_methods/permute_celltype_annotations

353
methods_transcript_assignment/comseg
Published Sep 19, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/comseg

351
methods_transcript_assignment/proseg
Published Sep 22, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_transcript_assignment/proseg

338
methods_segmentation/binning
Published Dec 3, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/binning

304
methods_segmentation/cellpose
Published Nov 22, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/cellpose

298
methods_segmentation/custom_segmentation
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/custom_segmentation

289
methods_segmentation/stardist
Published Jul 29, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_segmentation/stardist

288
datasets/loaders/vizgen_merscope
Published Sep 24, 2024 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/datasets/loaders/vizgen_merscope

196
methods_normalization/normalize_by_counts
Published Sep 20, 2025 by Open Problems in Single-Cell Analysis in task_ist_preprocessing/methods_normalization/normalize_by_counts

193

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