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    21 repositories

    • prometainfer

      Public
      Official repository for ProMetaInfer: A tool for inferring missing metadata in proteomics data using machine learning and database search.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 4, 2026Feb 4, 2026

    • Q1130

      Public
      Analysis script for project Q1130
      R
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • gcb-2025-scripts-to-pipeline

      Public
      This holds all files related to the workshop "From a Collection of Scripts to a Pipeline – Writing Nextflow Workflows with nf-core Best Practices" at the GCB 20…
      Python
      •
      MIT License
      •1•2•0•0•Updated Sep 22, 2025Sep 22, 2025

    • QBCQU

      Public
      Differential gene expression analysis and pathway analysis of RNAseq data, fork to allow for nested design of the experiment in QBCQU.
      Nextflow
      •
      MIT License
      •23•0•0•0•Updated Aug 21, 2025Aug 21, 2025

    • nfcore-crisprseq-data

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 26, 2025May 26, 2025

    • Processor_specifications_collector

      Public
      Collects specifications of Intel, AMD and more processors and summarizes them in one file
      Groovy
      •
      MIT License
      •1•0•0•0•Updated May 22, 2025May 22, 2025

    • BIOPM_helper_scripts

      Public
      Small helper scripts for data transformation and analysis
      Python
      •1•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • MetaAnalyzer

      Public
      MetaAnalyzer is a tool to analyze and aggregate human-derived metadata of the metadata schemes for the DZIF microbial OMICs database.
      metadataanalyzeaggregation
      metadataanalyzeaggregationomicsdzif
      JavaScript
      •
      MIT License
      •1•1•0•0•Updated Sep 6, 2024Sep 6, 2024

    • Microbial-OMICs

      Public
      Metadata schemes implemented in LinkML for the DZIF microbial OMICs database plus building scripts for the DZIF DataHarmonizer.
      metadataomicslinkml
      metadataomicslinkmldzifdataharmonizer
      Python
      •
      MIT License
      •1•2•0•0•Updated Sep 3, 2024Sep 3, 2024

    • DZIFDataHarmonizer

      Public
      JavaScript
      •
      MIT License
      •37•1•0•0•Updated Sep 3, 2024Sep 3, 2024

    • QOOBR

      Public
      Data analysis QOOBR
      HTML
      •4•0•0•0•Updated May 20, 2024May 20, 2024

    • nanoseq-qxstt

      Public
      Nanopore demultiplexing, QC and alignment pipeline
      Nextflow
      •
      MIT License
      •105•0•0•1•Updated May 17, 2024May 17, 2024

    • QSARK

      Public
      Data analysis for sarek paper
      PostScript
      •
      MIT License
      •0•2•0•0•Updated Feb 16, 2024Feb 16, 2024

    • rnaseq-benchmark

      Public
      Comparison of the output of different versions of the nf-core/rnaseq pipeline for 3 datasets containing ERCC spike-ins
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • MS-cladribine-study

      Public
      Data analysis QMKMK-clad
      HTML
      •4•0•0•0•Updated Oct 10, 2023Oct 10, 2023

    • qfendcnv

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Sep 4, 2023Sep 4, 2023

    • r-project-template

      Public template
      R project template
      HTML
      •
      MIT License
      •2•2•0•0•Updated Feb 16, 2023Feb 16, 2023

    • anovaget-shiny

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated Jan 25, 2023Jan 25, 2023

    • QSCNN

      Public
      Differential gene expression analysis and of miRNA-seq data for project QSCNN
      R
      •
      MIT License
      •23•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • sarek-QSTHO

      Public
      Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
      Nextflow
      •
      MIT License
      •529•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • smrnaseq

      Public
      A small-RNA sequencing analysis pipeline (forked from Kevin Menden with fixes for trimming parameters)
      Nextflow
      •
      MIT License
      •132•0•0•0•Updated Jun 15, 2021Jun 15, 2021
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