Repositories list

• seer-watchdog

  Public
  Application to move around data files from instrument computers to network drives or directly to S3

  Python

  •00 forks•11 star•00 issues•11 pull request•Updated Apr 10, 2026Apr 10, 2026

• pas-notebooks-codespaces

  Public
  GitHub Codespaces for PAS Notebooks

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• PASToolsR

  Public
  R companion package for the PAS notebooks

  rproteomicsseer+ 1

  rproteomicsseerms

  R

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 1, 2026Apr 1, 2026

• terraform-netskope-publisher-aws

  Public
  HCL

  •

  Apache License 2.0

  •99 forks•00 stars•00 issues•00 pull requests•Updated Sep 25, 2025Sep 25, 2025

• action-mypy

  Public
  Run mypy with reviewdog on pull requests to improve code writing experience.

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •99 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2025May 6, 2025

• alphapeptdeep

  Public
  Deep learning framework for proteomics

  Jupyter Notebook

  •

  Apache License 2.0

  •2626 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2025May 6, 2025

• aa-scib-pipeline

  Public
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.

  Python

  •

  MIT License

  •2929 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2025May 6, 2025

• tdf2mzml

  Public
  Python

  •

  Other

  •1717 forks•00 stars•00 issues•00 pull requests•Updated May 6, 2025May 6, 2025

• timsconvert

  Public
  TIMS TOF Cloud AWS Support

  HTML

  •

  Apache License 2.0

  •2323 forks•00 stars•00 issues•00 pull requests•Updated May 2, 2025May 2, 2025

• alphapept-legacy

  Public
  A modular, python-based framework for mass spectrometry. Powered by nbdev.

  Python

  •

  Apache License 2.0

  •3535 forks•00 stars•00 issues•00 pull requests•Updated Feb 3, 2023Feb 3, 2023

• red-bird

  Public
  Repository Patterns for Python

  Python

  •

  MIT License

  •2525 forks•00 stars•00 issues•00 pull requests•Updated Jan 17, 2023Jan 17, 2023

• action-black

  Public
  Run black with Reviewdog :dog:

  Shell

  •

  MIT License

  •1212 forks•00 stars•00 issues•00 pull requests•Updated May 2, 2022May 2, 2022

• LectinOracle

  Public
  Deep learning model to predict interactions between proteins and glycans

  Jupyter Notebook

  •

  MIT License

  •55 forks•00 stars•00 issues•00 pull requests•Updated Aug 16, 2021Aug 16, 2021

• masif

  Public
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

  Python

  •

  Apache License 2.0

  •168168 forks•00 stars•00 issues•00 pull requests•Updated May 11, 2021May 11, 2021

• dia_analyze

  Public
  Suite of tools to compare DIA engine output

  Python

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 8, 2021Feb 8, 2021