* using log directory ‘/srv/hornik/tmp/CRAN_pretest/BayesMallowsSMC2.Rcheck’
* using R Under development (unstable) (2026-01-22 r89323)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
   Debian clang version 21.1.8 (1+b1)
   Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘BayesMallowsSMC2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BayesMallowsSMC2’ version ‘0.2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Oystein Sorensen <oystein.sorensen.1985@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
 SMC (13:5)
 Sorensen (16:8)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesMallowsSMC2’ can be installed ... [62s/62s] OK
* used C++ compiler: ‘Debian clang version 21.1.8 (1+b1)’
* checking C++ specification ... INFO
 specified C++17
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [1s/1s] ERROR
Running examples in ‘BayesMallowsSMC2-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: set_hyperparameters
> ### Title: Set hyperparameters
> ### Aliases: set_hyperparameters
> 
> ### ** Examples
> 
> # Example: Set hyperparameters and use them with partial rankings
> # Set hyperparameters with default values
> hyperparams1 <- set_hyperparameters(n_items = 5)
> 
> # Set hyperparameters with custom prior for alpha
> # A larger alpha_shape and smaller alpha_rate increases the prior mean
> hyperparams2 <- set_hyperparameters(
+   n_items = 5, 
+   alpha_shape = 2, 
+   alpha_rate = 1
+ )
> 
> # Use the hyperparameters with compute_sequentially
> # This example uses partial rankings with a small number of particles
> # for fast execution suitable for CRAN checks
> set.seed(123)
> mod <- compute_sequentially(
+   partial_rankings,
+   hyperparameters = hyperparams2,
+   smc_options = set_smc_options(
+     n_particles = 20, 
+     n_particle_filters = 4,
+     max_rejuvenation_steps = 3
+   )
+ )
Error: Mat::elem(): size mismatch
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [10s/10s] ERROR
 Running ‘testthat.R’ [9s/9s]
...

</details>



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- Fixes osorensen/BayesMallowsSMC2#69

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