first draft of the Maslomecz group (IA Wielbark, Poland) dataset for the almost accepted Golubinski 2026 paper in Genome Biology #921

	name: trident validate

	# Trigger the workflow on push or pull request, but only for the master branch
	on:
	pull_request:
	push:
	branches: [master]

	jobs:
	validate:
	name: validate packages
	runs-on: ubuntu-latest
	steps:

	- name: Clone data repo
	uses: actions/checkout@v3
	with:
	path: data

	- name: Check if all files have UTF-8 encoding and Unix line endings
	run: ./checkFileEncoding.sh
	working-directory: ./data

	- name: Install trident
	run: \|
	wget https://github.com/poseidon-framework/poseidon-hs/releases/latest/download/trident-Linux
	chmod +x trident-Linux

	- name: Validation
	run: ./trident-Linux validate -d data --ignoreGeno --logMode VerboseLog

	- name: Check for displaced files
	run: ./checkForDisplacedFiles.sh
	working-directory: ./data

	- name: Check if all registered files are actually LFS pointers
	run: git lfs fsck --pointers
	working-directory: ./data

	- name: Check if any .janno and .ssf files start with a single or double-quote character
	run: ./checkQuotes.sh
	working-directory: ./data

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