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SioziosKSioziosK
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Merge branch 'main' into 2022_Tiesler_colonialCampeche
2 parents 6ac523c + 81cab82 commit d5bd8ec

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Lines changed: 2 additions & 2 deletions

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‎packages/2025_daSilva_NeolithicHLA/2025_daSilva_NeolithicHLA.ssf‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -26,7 +26,7 @@ TR85 half ds n/a ERR10168326 PRJEB53796 SAMEA110176184 TR85 ERS12274996 2025-01-
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TR83 half ds n/a ERR10168328 PRJEB53796 SAMEA110176186 TR83 ERS12274998 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA TR83 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/028/ERR10168328/ERR10168328.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/028/ERR10168328/ERR10168328.fastq.gz 34236845 eac2b3ee7554906bfefc375681fae162 941783 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168328/TR83.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168328/TR83.bam.bai c2b0f1b356359d5d10d4b0b173ffc422;0da782533474fde445789af5ce2612c3
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WB2060 half ds n/a ERR10168329 PRJEB53796 SAMEA110176187 WB2060 ERS12274999 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA WB2060 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/029/ERR10168329/ERR10168329.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/029/ERR10168329/ERR10168329.fastq.gz 898515052 326bbf795b5765bf1656917e8893b913 24315741 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168329/WB2060.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168329/WB2060.bam.bai ebf5c63de4edaf89c196d9035bb63165;33d6c3ce9d86238852ded661352a6552
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WB16c half ds n/a ERR10168332 PRJEB53796 SAMEA110176190 WB16c ERS12275002 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA WB16c WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/032/ERR10168332/ERR10168332.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/032/ERR10168332/ERR10168332.fastq.gz 2612423555 38f7e47c4e01fbd45a0cb4d644f76218 73913072 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168332/WB16c.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168332/WB16c.bam.bai 9b37e4d6e04690fe85a6e862ee5fefb4;a37db12b2341bdb4070912429a51c49d
29-
nWB13c half ds n/a ERR10168333 PRJEB53796 SAMEA110176191 WB13c ERS12275003 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA WB13c WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/033/ERR10168333/ERR10168333.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/033/ERR10168333/ERR10168333.fastq.gz 206347681 d875c1d340554a85be06acd6fdb5d1e3 5068280 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168333/WB13c.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168333/WB13c.bam.bai 927cc8fff505d152f6ffb062df60120c;8b52210a20ceaeb550c44eb7c7315473
29+
WB13c half ds n/a ERR10168333 PRJEB53796 SAMEA110176191 WB13c ERS12275003 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA WB13c WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/033/ERR10168333/ERR10168333.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/033/ERR10168333/ERR10168333.fastq.gz 206347681 d875c1d340554a85be06acd6fdb5d1e3 5068280 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168333/WB13c.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168333/WB13c.bam.bai 927cc8fff505d152f6ffb062df60120c;8b52210a20ceaeb550c44eb7c7315473
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WB13b1 half ds n/a ERR10168336 PRJEB53796 SAMEA110176194 WB13b1 ERS12275006 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA WB13b1 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/036/ERR10168336/ERR10168336.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/036/ERR10168336/ERR10168336.fastq.gz 1505711744 76d0abbe619ebadf2d4da44dadd773f4 40786274 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168336/WB13b1.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168336/WB13b1.bam.bai 992cda4b9b09d35c6967c3db6f80763b;b51a6a9fa36acbdb56faacaf4dd74142
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WB17c2 half ds n/a ERR10168339 PRJEB53796 SAMEA110176197 WB17c2 ERS12275009 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA WB17c2 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/039/ERR10168339/ERR10168339.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/039/ERR10168339/ERR10168339.fastq.gz 511918512 8817b25cd5bb9c1857ce1148f4b5eae3 14613721 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168339/WB17c2.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168339/WB17c2.bam.bai b8eee3a15cd43c795e6c18654d30672d;f182258434f1e1ea0494e1339580e7ad
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WB12c1 half ds n/a ERR10168345 PRJEB53796 SAMEA110176203 WB12c1 ERS12275015 2025-01-21 2025-01-21 Illumina NovaSeq 6000 SINGLE GENOMIC ILLUMINA WB12c1 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR101/045/ERR10168345/ERR10168345.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR101/045/ERR10168345/ERR10168345.fastq.gz 455533267 bb6d8122d21dc239c18310339af8cd80 11783007 ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168345/WB12c1.bam;ftp.sra.ebi.ac.uk/vol1/run/ERR101/ERR10168345/WB12c1.bam.bai d69e3131b6dcec8b509ea150f05e6321;3c6e7a58e37ff7dda1515c996cadffd0

‎packages/2025_daSilva_NeolithicHLA/2025_daSilva_NeolithicHLA.tsv‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -26,7 +26,7 @@ TR85 TR85_TR85 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/TR8
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TR83 TR83_TR83 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/TR83_TR83_L1_R1.fastq.gz NA NA ERR10168328.fastq.gz NA NA
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WB2060 WB2060_WB2060 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/WB2060_WB2060_L1_R1.fastq.gz NA NA ERR10168329.fastq.gz NA NA
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WB16c WB16c_WB16c 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/WB16c_WB16c_L1_R1.fastq.gz NA NA ERR10168332.fastq.gz NA NA
29-
nWB13c nWB13c_WB13c 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/nWB13c_WB13c_L1_R1.fastq.gz NA NA ERR10168333.fastq.gz NA NA
29+
WB13c nWB13c_WB13c 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/nWB13c_WB13c_L1_R1.fastq.gz NA NA ERR10168333.fastq.gz NA NA
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WB13b1 WB13b1_WB13b1 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/WB13b1_WB13b1_L1_R1.fastq.gz NA NA ERR10168336.fastq.gz NA NA
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WB17c2 WB17c2_WB17c2 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/WB17c2_WB17c2_L1_R1.fastq.gz NA NA ERR10168339.fastq.gz NA NA
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WB12c1 WB12c1_WB12c1 1 4 SE Homo sapiens (modern human) double half <PATH_TO_DATA>/WB12c1_WB12c1_L1_R1.fastq.gz NA NA ERR10168345.fastq.gz NA NA

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