Fix linting

Author: famosab

CHANGELOG.md

@@ -20,7 +20,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 | Dependency | Old version | New version |
 | ---------- | ----------- | ----------- |
-| MultiQC.   | 1.25.1      | 1.32        |
+| MultiQC    | 1.25.1      | 1.32        |
 
 ### `Deprecated`
 

modules.json

@@ -7,7 +7,7 @@
                 "nf-core": {
                     "bcftools/view": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
                         "installed_by": ["modules"]
                     },
                     "gunzip": {
@@ -22,42 +22,41 @@
                     },
                     "picard/liftovervcf": {
                         "branch": "master",
-                        "git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
+                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
                         "installed_by": ["modules"]
                     },
                     "tabix/tabix": {
                         "branch": "master",
-                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
+                        "git_sha": "7b972bdde6fa2154a95cf08a8ba1821f228f20d3",
                         "installed_by": ["modules"]
                     },
                     "untar": {
                         "branch": "master",
-                        "git_sha": "3e548877f25a5980a177cc4f81d2d2e8c24164ef",
+                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                         "installed_by": ["modules"]
                     },
                     "vcf2maf": {
                         "branch": "master",
-                        "git_sha": "538cbd31deef6e6abe0daafa704a918ad6974699",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/vcf2maf/vcf2maf.diff"
+                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "installed_by": ["modules"]
                     }
                 }
             },
             "subworkflows": {
                 "nf-core": {
                     "utils_nextflow_pipeline": {
                         "branch": "master",
-                        "git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
+                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nfcore_pipeline": {
                         "branch": "master",
-                        "git_sha": "51ae5406a030d4da1e49e4dab49756844fdd6c7a",
+                        "git_sha": "271e7fc14eb1320364416d996fb077421f3faed2",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nfschema_plugin": {
                         "branch": "master",
-                        "git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
+                        "git_sha": "4b406a74dc0449c0401ed87d5bfff4252fd277fd",
                         "installed_by": ["subworkflows"]
                     }
                 }

tests/nextflow.config

@@ -12,6 +12,7 @@ aws.client.anonymous = true
 
 // Should take care of all basepath
 params {
-    modules_testdata_base_path = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
-    igenomes_base              = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data'
+    modules_testdata_base_path   = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/'
+    igenomes_base                = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data'
+    pipelines_testdata_base_path = 'https://github.com/qbic-pipelines/test-datasets/raw/refs/heads/main/'
 }