fix linting

Author: famosab

nextflow.config

@@ -171,12 +171,11 @@ profiles {
         apptainer.runOptions    = '--nv'
         singularity.runOptions  = '--nv'
     }
-    test      { includeConfig 'conf/test.config'      }
-    test_vep  { includeConfig 'conf/test_vep.config'  }
+    test { includeConfig 'conf/test.config' }
 }
 
 // Load qbic-pipelines/vcftomaf custom profiles from different institutions.
-includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/pipeline/vcftomaf.config" : "/dev/null"
+// includeConfig params.custom_config_base && (!System.getenv('NXF_OFFLINE') || !params.custom_config_base.startsWith('http')) ? "${params.custom_config_base}/pipeline/vcftomaf.config" : "/dev/null"
 
 // Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
 // Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled
@@ -260,7 +259,7 @@ manifest {
             github: '@famosab',
             contribution: ['maintainer'],
             orcid: '0000-0003-1387-0251'
-        ],
+        ]
     ]
     homePage        = 'https://github.com/qbic-pipelines/vcftomaf'
     description     = """Convert vcf files to maf format"""