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This repository was archived by the owner on Apr 25, 2025. It is now read-only.
Copy file name to clipboardExpand all lines: source/install/index.rst
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@@ -38,20 +38,20 @@ option for all cases. In general we recommend the following:
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.. _distributions:
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QIIME 2 2024.10 distributions
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-----------------------------
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QIIME 2 2025.4 distributions
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----------------------------
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As of 2024.10, QIIME 2 releases now include the following QIIME 2 distributions that are available for install:
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As of 2025.4, QIIME 2 releases now include the following QIIME 2 distributions that are available for install:
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- ``amplicon``
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- ``metagenome``
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- ``moshpit``
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- ``pathogenome``
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- ``tiny``
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QIIME 2 2024.10 Amplicon Distribution
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QIIME 2 2025.4 Amplicon Distribution
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....................................
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The 2024.10 release of the QIIME 2 Amplicon Distribution includes the QIIME 2 framework, ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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The 2025.4 release of the QIIME 2 Amplicon Distribution includes the QIIME 2 framework, ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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- ``q2-alignment``
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- ``q2-composition``
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- ``q2-quality-control``
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- ``q2-quality-filter``
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- ``q2-sample-classifier``
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- ``q2-stats``
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- ``q2-taxa``
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- ``q2-types``
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- ``q2-vizard``
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- ``q2-vsearch``
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- ``rescript``
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QIIME 2 2024.10 Metagenome Distribution
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.......................................
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QIIME 2 2025.4 MOSHPIT (formerly Metagenome) Distribution
The 2024.10 release of the QIIME 2 Metagenome Distribution includes the QIIME 2 framework, ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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The 2025.4 release of the QIIME 2 MOSHPIT (formerly Metagenome) Distribution includes the QIIME 2 framework, ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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- ``q2-alignment``
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- ``q2-assembly``
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- ``q2-composition``
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- ``q2-cutadapt``
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- ``q2-quality-filter``
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- ``q2-sample-classifier``
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- ``q2-sapienns``
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- ``q2-sourmash``
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- ``q2-taxa``
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- ``q2-types``
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- ``q2-vizard``
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- ``q2-vsearch``
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- ``rescript``
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QIIME 2 2024.10 Pathogenome Distribution
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........................................
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QIIME 2 2025.4 Pathogenome Distribution
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.......................................
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The 2024.10 release of the QIIME 2 Metagenome Distribution includes the QIIME 2 framework, ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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The 2025.4 release of the QIIME 2 Pathogenome Distribution includes the QIIME 2 framework, ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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- ``q2-amrfinderplus``
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- ``q2-assembly``
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- ``q2-demux``
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- ``q2-feature-classifier``
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- ``q2-feature-table``
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- ``q2-longitudinal``
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- ``q2-metadata``
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- ``q2-quality-control``
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- ``q2-sample-classifier``
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- ``q2-taxa``
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- ``q2-vizard``
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- ``rescript``
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QIIME 2 2024.10 Tiny Distribution
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.................................
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QIIME 2 2025.4 Tiny Distribution
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................................
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The 2024.10 release of the QIIME 2 Tiny Distribution includes the QIIME 2 framework and ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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The 2025.4 release of the QIIME 2 Tiny Distribution includes the QIIME 2 framework and ``q2cli`` (a QIIME 2 command-line interface) and the following plugins:
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- ``q2-metadata``
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- ``q2-types``
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The QIIME 2 Tiny Distribution is a minimal QIIME 2 environment that can be used by developers who are in need of a basic development environment, or community plugin users who do not need the entire Amplicon, Metagenome or Pathogenome Distributions in their QIIME 2 environment.
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The QIIME 2 Tiny Distribution is a minimal QIIME 2 environment that can be used by developers who are in need of a basic development environment, or community plugin users who do not need the entire Amplicon, MOSHPIT or Pathogenome Distributions in their QIIME 2 environment.
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.. note:: The Amplicon Distribution is necessary to run the commands in the :doc:`QIIME 2 tutorials <../tutorials/index>`. If there are additional QIIME 2 plugins or interfaces you would like to install, please consult the relevant package(s) documentation.
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