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Update `typing` aliases to use `collections.abc` instead #759

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Run time

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Job	Run time
pylint	2m 49s
autogenerate-notebooks	1m 45s
notebooks	6m 7s
pytest	3m 15s
format	1m 23s
mypy	1m 39s
dev-tools	1m 42s
	18m 40s

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