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Seurat v5.4.0

Test environments

  • Ubuntu 20.04 (local) (R 4.3.2)
  • macOS 15.6.1 (local) (R 4.5.1)
  • Ubuntu 24.04 (GitHub Actions Runner): R-oldrelease, R-release
  • win-builder: R-oldrelease, R-release, R-devel

R CMD check results

Status: OK

* checking CRAN incoming feasibility ... [42s] NOTE
Maintainer: 'Rahul Satija <seurat@nygenome.org>'

Suggests or Enhances not in mainstream repositories:
  BPCells, presto
Availability using Additional_repositories specification:
  BPCells   yes   https://bnprks.r-universe.dev   
  presto    yes   https://satijalab.r-universe.dev

The maintainer remains Rahul Satija and the email is correct. BPCells and presto are hosted on R-universe and used conditionally in Seurat.

* checking package dependencies ... NOTE
Packages suggested but not available for checking: 'BPCells', 'presto'

BPCells and presto are hosted on R-universe and used conditionally in Seurat.

* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R

There seems to be a slight difference in ORCID formatting between Author and Authors@R; the information in both is the same.

* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'BPCells'

BPCells is listed under "Suggests"; it is hosted on R-universe and used conditionally in Seurat.

Reverse dependency check results

We checked 80 reverse dependencies (40 from CRAN + 40 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package, and saw no new problems.
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