Merge pull request #463 from softwarepub/feature/457-good-init-no-dataverse

Feature/457 good init no dataverse

Author: poikilotherm

docs/source/tutorials/automated-publication-with-ci.md

@@ -46,6 +46,10 @@ This also works with many Jupyter Hubs, no need for a Linux computer!
    ```{code-block} bash
      python -m pip install hermes
    ```
+   If already installed, make sure you have the latest version by running:
+   ```{code-block} bash
+     python -m pip install hermes --upgrade
+   ```
 5. Once installed, navigate to the main directory of your project.
    ```{code-block} bash
      cd myproject/

poetry.lock

@@ -39,6 +39,7 @@ dependencies = [
     "pydantic-settings>=2.1.0, <3.0.0",
     "requests-oauthlib>=2.0.0, <3.0.0",
     "pynacl>=1.6.2, <2.0.0",
+    "jinja2 (>=3.1.6,<4.0.0)",
 ]
 requires-python = ">=3.11, <4.0.0"
 
@@ -48,12 +49,10 @@ documentation = "https://hermes.software-metadata.pub"
 repository = "https://github.com/softwarepub/hermes.git"
 issues = "https://github.com/softwarepub/hermes/issues"
 
-
 [project.scripts]
 hermes = "hermes.commands.cli:main"
 hermes-marketplace = "hermes.commands.marketplace:main"
 
-
 [project.entry-points."hermes.harvest"]
 cff = "hermes.commands.harvest.cff:CffHarvestPlugin"
 codemeta = "hermes.commands.harvest.codemeta:CodeMetaHarvestPlugin"
@@ -106,22 +105,19 @@ reuse = "^1.1.2"
 sphinxcontrib-datatemplates = "~=0.11"
 
 
-
 [tool.taskipy.tasks]
 docs-build = "poetry run sphinx-build -M html docs/source docs/build -W"
 docs-clean = "poetry run sphinx-build -M clean docs/source docs/build"
 docs-live = "poetry run sphinx-autobuild docs/source docs/build"
 flake8 = "poetry run flake8 ./test/ ./src/ --count --select=E9,F63,F7,F82 --statistics"
 
-
 [tool.pytest.ini_options]
 norecursedirs = "docs/*"
 testpaths = [
     "test"
 ]
 addopts = "--cov=hermes --cov-report term"
 
-
 [build-system]
 requires = [
     "poetry-core>=2.1.3, <3.0.0"

pyproject.toml

@@ -267,21 +267,6 @@ def __init__(self, command: HermesDepositCommand, ctx: CodeMetaContext, client=N
 
         if client is None:
             auth_token = self.config.auth_token
-
-            # TODO reactivate this code again, once we use Zenodo OAuth again (once the refresh token works)
-            # If auth_token is a refresh-token, get the auth-token from that.
-            # if str(auth_token).startswith("REFRESH_TOKEN:"):
-            #     _log.debug(f"Getting token from refresh_token {auth_token}")
-            #     # TODO How do we know if this targets sandbox or not?
-            #     # Now we assume it's sandbox
-            #     connect_zenodo.setup(True)
-            #     tokens = connect_zenodo.oauth_process() \
-            #         .get_tokens_from_refresh_token(auth_token.split("REFRESH_TOKEN:")[1])
-            #     _log.debug(f"Tokens: {str(tokens)}")
-            #     auth_token = tokens.get("access_token", "")
-            #     _log.debug(f"Auth Token: {auth_token}")
-            #     # TODO Update the secret (github/lab token is needed)
-
             if not auth_token:
                 raise DepositionUnauthorizedError("No valid auth token given for deposition platform")
             self.client = self.invenio_client_class(self.config,