gh-trs/tests/test_config_SMK.yml at main · suecharo/gh-trs · GitHub

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---
id: fca0e8bc-afbb-40a4-924b-35326d1efb19
version: 1.0.0
authors:
  - github_account: suecharo
workflow:
  name: Snakefile
  readme: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/README.md"
  language:
    type: SMK
    version: "1.0"
  files:
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/Snakefile"
      target: Snakefile
      type: primary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/genome.fa"
      target: data/genome.fa
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/genome.fa.amb"
      target: data/genome.fa.amb
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/genome.fa.ann"
      target: data/genome.fa.ann
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/genome.fa.bwt"
      target: data/genome.fa.bwt
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/genome.fa.fai"
      target: data/genome.fa.fai
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/genome.fa.pac"
      target: data/genome.fa.pac
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/genome.fa.sa"
      target: data/genome.fa.sa
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/samples/A.fastq"
      target: data/samples/A.fastq
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/data/samples/B.fastq"
      target: data/samples/B.fastq
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/envs/calling.yaml"
      target: envs/calling.yaml
      type: secondary
    - url: "https://raw.githubusercontent.com/suecharo/gh-trs/458d0524e667f2442a5effb730b523c1f15748d4/tests/SMK/wf/envs/mapping.yaml"
      target: envs/mapping.yaml
      type: secondary
  testing:
    - id: test_1
      files:
        - url: "https://github.com/suecharo/gh-trs/blob/main/tests/SMK/test/wf_engine_params.json"
          type: "wf_engine_params"