Merge branch 'main' of https://github.com/t-neumann/GenomicOps-MCP #1

	name: CI Tests

	on:
	push:
	branches:
	- main
	- dev
	pull_request:
	workflow_dispatch:

	jobs:
	test:
	name: Unit Tests
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"

	- name: Install uv
	run: pip install uv

	- name: Install dependencies
	run: uv sync --dev

	- name: Run unit tests
	run: \|
	mkdir -p test-results
	uv run pytest \
	-o log_cli=true --log-cli-level=INFO \
	--junitxml=test-results/unit-tests.xml \| tee test-results/unit.log

	- name: Upload unit test results
	if: always() # upload even if tests fail
	uses: actions/upload-artifact@v4
	with:
	name: unit-test-results
	path: test-results/

	integration:
	name: Integration Tests
	runs-on: ubuntu-latest
	needs: test
	if: github.event_name == 'workflow_dispatch' \|\| github.ref == 'refs/heads/main'
	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"

	- name: Install uv
	run: pip install uv

	- name: Install dependencies
	run: uv sync --dev

	- name: Run integration tests
	run: \|
	mkdir -p test-results
	uv run pytest --integration \
	-o log_cli=true --log-cli-level=INFO \
	--junitxml=test-results/integration-tests.xml \| tee test-results/integration.log

	- name: Upload integration test results
	if: always()
	uses: actions/upload-artifact@v4
	with:
	name: integration-test-results
	path: test-results/

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