This folder contains an ipython notebook file VWF73_pipeline.ipynb that gives an overview of the high throughput sequencing analysis done for the following manuscript:
"Exosite interactions are required for ADAMTS13 substrate recognition"
Colin A. Kretz*, Kärt Tomberg*, Alexander Van Esbroeck, Andrew Yee, and David Ginsburg
* Shared first authorship
It contains:
- Information about raw fastq file location
- All in-house developed scripts for read mapping, filtering, and translation
- DESEQ2 analysis for significantly enriched peptides