Skip to content

Commit 4fef6bd

Browse files
authored
Update paper.md
1 parent f8828d5 commit 4fef6bd

1 file changed

Lines changed: 0 additions & 83 deletions

File tree

paper.md

Lines changed: 0 additions & 83 deletions
Original file line numberDiff line numberDiff line change
@@ -1,84 +1 @@
1-
---
2-
title: 'Unfold.jl: Regression models for Cognitive Neuroscience'
3-
tags:
4-
- Julia
5-
- EEG
6-
- neuroimaging
7-
authors:
8-
- name: Benedikt V. Ehinger
9-
orcid: 0000-0002-6276-3332
10-
equal-contrib: false
11-
affiliation: "1, 2" # (Multiple affiliations must be quoted)
12-
13-
affiliations:
14-
- name: Stuttgart Center for Simulation Science, University of Stuttgart, Germany
15-
index: 1
16-
- name: Institute for Visualization and Interactive Systems, University of Stuttgart, Germany
17-
index: 2
18-
date: 06 November 2023
19-
bibliography: paper.bib
201

21-
22-
---
23-
24-
# Summary
25-
26-
27-
Overlapping event responses, (non-)linear effects and confounds, outliers, item effects - all pretty common features limiting the application of neuroimaging methods. Here, we focus on EEG without loss of generality. Especially event-related potentials in naturalistic paradigms (e.g. ET+EEG, VR+EEG, MoBi) but also classical paradigms (evidence Integration, language, even oddball tasks) require such techniques.
28-
29-
Unfold.jl implements the model fitting based on the popular wilkinson~formula+syntax. It is feature-par with matlab-unfold. In addition it offers speed-improvements (up to 100x on GPUs) and extensions for outlier-robust fits, back2back regression, and mixed models.
30-
31-
While implemented in Julia, it is straight forward to also call from Python and tutorials are available.
32-
33-
34-
35-
# Statement of need
36-
37-
38-
39-
# Mathematics
40-
41-
Single dollars ($) are required for inline mathematics e.g. $f(x) = e^{\pi/x}$
42-
43-
Double dollars make self-standing equations:
44-
45-
$$\Theta(x) = \left\{\begin{array}{l}
46-
0\textrm{ if } x < 0\cr
47-
1\textrm{ else}
48-
\end{array}\right.$$
49-
50-
You can also use plain \LaTeX for equations
51-
\begin{equation}\label{eq:fourier}
52-
\hat f(\omega) = \int_{-\infty}^{\infty} f(x) e^{i\omega x} dx
53-
\end{equation}
54-
and refer to \autoref{eq:fourier} from text.
55-
56-
# Citations
57-
58-
Citations to entries in paper.bib should be in
59-
[rMarkdown](http://rmarkdown.rstudio.com/authoring_bibliographies_and_citations.html)
60-
format.
61-
62-
If you want to cite a software repository URL (e.g. something on GitHub without a preferred
63-
citation) then you can do it with the example BibTeX entry below for @fidgit.
64-
65-
For a quick reference, the following citation commands can be used:
66-
- `@author:2001` -> "Author et al. (2001)"
67-
- `[@author:2001]` -> "(Author et al., 2001)"
68-
- `[@author1:2001; @author2:2001]` -> "(Author1 et al., 2001; Author2 et al., 2002)"
69-
70-
# Figures
71-
72-
Figures can be included like this:
73-
![Caption for example figure.\label{fig:example}](figure.png)
74-
and referenced from text using \autoref{fig:example}.
75-
76-
Figure sizes can be customized by adding an optional second parameter:
77-
![Caption for example figure.](figure.png){ width=20% }
78-
79-
# Acknowledgements
80-
81-
We acknowledge contributions from Brigitta Sipocz, Syrtis Major, and Semyeong
82-
Oh, and support from Kathryn Johnston during the genesis of this project.
83-
84-
# References

0 commit comments

Comments
 (0)