This repository houses code used to analyze and generate figures from all data presented in Bottorff et al., 2026.
Scripts detail analyses required to make figures. Large raw data and saved data objects referred to in each script are available for download via Box.
The code used to generate each figure or table is presented below for each part of every figure. Code sections are labelled within each script for the figure or table they support.
| FIGURES | A | B | C | D | E | F |
|---|---|---|---|---|---|---|
| Figure 1 | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | ||
| Figure 2 | P348_4_HC_T1D_SINGLE_CELL_FIGURES_TABLES_RECREATE.Rmd | P348_4_HC_T1D_SINGLE_CELL_FIGURES_TABLES_RECREATE.Rmd | P348_4_HC_T1D_SINGLE_CELL_FIGURES_TABLES_RECREATE.Rmd | P348_4_HC_T1D_SINGLE_CELL_FIGURES_TABLES_RECREATE.Rmd | TN10_WHOLE_BLOOD_RNA_FIGURES_TABLES_RECREATE.Rmd | |
| Figure 3 | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | ||||
| Figure 4 | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | |||
| Figure 5 | Made in Inkscape | TN10_T1D_FLOW_FIGURES_TABLES_RECREATE.Rmd | ||||
| Figure 6 | ABATE_ATAC_FIGURES_TABLES_RECREATE.Rmd | P348_4_HC_T1D_SINGLE_CELL_FIGURES_TABLES_RECREATE.Rmd | .R | EX_VIVO_TEX_FIGURES_TABLES_RECREATE.Rmd | ||
| Figure 7 | Made in Inkscape | Made in Inkscape | ABATE_ATAC_FIGURES_TABLES_RECREATE.Rmd | P348_4_HC_T1D_SINGLE_CELL_FIGURES_TABLES_RECREATE | P348_4_HC_T1D_SINGLE_CELL_FIGURES_TABLES_RECREATE |