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Template update for nf-core/tools v4.0.0

Status: Open.

#86 In Clinical-Genomics/oncorefiner;

· fellen31 opened on Apr 28, 2026

Broken link to design guidelines in contribution guidelines

Status: Open.

#80 In Clinical-Genomics/oncorefiner;

· fellen31 opened on Apr 23, 2026

Contribution guidelines hints this is an nf-core pipeline

Status: Open.

#79 In Clinical-Genomics/oncorefiner;

· fellen31 opened on Apr 23, 2026

Fix meta ID in tests to match new test data file names

BugSomething isn't workingSomething isn't working

Status: Open.

#76 In Clinical-Genomics/oncorefiner;

· mathiasbio opened on Apr 21, 2026

Use nf-schema to validate and construct channels

Needs RefinementIssue needs to be better definedIssue needs to be better defined

User-StoryA User StoryA User Story

Status: Open.

#75 In Clinical-Genomics/oncorefiner;

· mathiasbio opened on Apr 21, 2026

VEP removes SVs it cannot annotate

BugSomething isn't workingSomething isn't working

Status: Open.

#74 In Clinical-Genomics/oncorefiner;

· mathiasbio opened on Apr 20, 2026

Not possible to run pipeline with untarred VCF file

BugSomething isn't workingSomething isn't working

Status: Open.

#65 In Clinical-Genomics/oncorefiner;

· beatrizsavinhas opened on Apr 1, 2026