Corinna Patzina-Mehling, ..., Conny Landgraf, Aimara Planillo, Florian Ganz, Stephanie Kramer-Schadt, Sandra Junglen (2026) to be updated once accepted. Nature Communications XXX:XXX. DOI: xxx
- This repository contains the code and data to follow the mosquito and bird community diversity analyses in relation to infection rates (MIR) with West Nile virus. Scripts are stored in the R folder and are built based on a wrapper script that calls three different analysis files and runs the script in a loop across three years (2023, 2024, and 2023 and 2024 combined into 9999). If you want to run everything in one go, set the FLAG_run to 1 in the wrapper. If you want to run single scripts, set the FLAG_run <- 0 and provide the data_year you want to analyse at the top of each respective script. All plots and output files are stored in a respective year and Sys.Date folder to not overwrite previous analyses.
- Second, there is also a separate script showing the analyses for comparing the field survey from 2025 with the modelled bird abundances based on a field survey conducted in 2017 (Planillo et al. 2021, Div Distr).