feat: update include ATOF bar z

[zhiwanxu]

This is to include more QA checks on detector performance:

• ATOF z,
• ATOF time separately per Sector, Layer

We add the following registered ALERT engines and histograms:

• alert_atof_time_sl (s,l) ; 60 instances ; alert_atof_time_sl_{peak_location,sigma}_sector{S}_layer{L}.hipo ; 120 web items for mean and sigma
• alert_atof_z ; 1 instance ; alert_atof_z_rms.hipo ; 1 web item for z RMS
• alert_atof_z_sl (s,l) ; 60 instances ; alert_atof_z_sl_rms_sector{S}_layer{L}.hipo ; 60 web items for z RMS
• alert_atof_z_c4 ; 1 instance ; alert_atof_z_c4_{peak_location,sigma}.hipo ; 2 web items for mean and sigma
• alert_atof_z_c4_sl (s,l) ; 60 instances ; alert_atof_z_c4_sl_{peak_location,sigma}_sector{S}_layer{L}.hipo ; 120 web items for mean and sigma

Here c4 means looking at the hits that coincide a wedge hit on the central ATOF (component 4).

[Sangbaek]

1. major
   Test failed. Did you try this change in the ifarm?

cd /volatile/clas12/sangbaek/
git clone git@github.com:JeffersonLab/clas12-timeline.git
git clone git@github.com:JeffersonLab/clas12-timeline.git clas12-timeline-pr460
cd clas12-timeline-pr460
git fetch origin pull/460/head:pr460
git checkout pr460
mvn clean package
mkdir test_hipo
cd test_hipo/
ln -s /work/clas12b/rg-l/p0v8/mon/recon/022289 .
./bin/qtl-histogram -d test_pr460 --rundir test_hipo
./slurm/scripts/detectors.test_pr460.22289.sh
./bin/qtl-analysis -d test_pr460 --just-ana

Result:

/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_time_sl_sector00_layer0.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_time_sl_sector00_layer1.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_time_sl_sector00_layer2.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_time_sl_sector00_layer3.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_time_sl_sector01_layer0.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_time_sl_sector01_layer1.err:WARNING: no data for this timeline, not producing
(...)
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_z_c4_sl_sector00_layer0.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_z_c4_sl_sector00_layer1.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_z_c4_sl_sector00_layer2.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_z_c4_sl_sector00_layer3.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_z_c4_sl_sector01_layer0.err:WARNING: no data for this timeline, not producing
/lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/alert_atof_z_c4_sl_sector01_layer1.err:WARNING: no data for this timeline, not producing
(...)

2. minor
   There are too many histograms for the same quantities, defined for different levels.
   Of course, there is no strict rule about defining histograms at a certain level, but I feel like it's too frequent to be nuanced.
   There is similar case in FT.java so I wouldn't request change for ALERT.java for now.
   I will work on this in June.

[Sangbaek]

This is what ATOF_Time_sector00_layer00_component00 looks like. It won't be fitted with Gaussian.

[Sangbaek]

Some histograms have too small statistics and can't pass the minimum statistics condition.

Even if the condition is relaxed, it won't be able to be fitted with the existing fitter.

[zhiwanxu]

I made some change:

• loose all the conditions that requires entries > 300 to entries > 10.
• loose the conditions that require max > 30 to max > 3
• change the ALERTFitter.atof_time_fitter(), the fitting range is now dynamic based on the histogram range, this allows us to easily change the histogram setting when doing the check on an old timeline, without need to modify the fitter again.

[Sangbaek]

The biggest problem of the last review is that the reviewer (@Sangbaek) ran the timeline code on the pass0v8. It should've been pass0v9. Thanks to the patience of developers, I re-ran the test on the v9. Time now indeed has a gaussian peak. I'm not sure about z.

cd /volatile/clas12/sangbaek/
git clone git@github.com:JeffersonLab/clas12-timeline.git clas12-timeline-pr460
cd clas12-timeline-pr460
git fetch origin pull/460/head:pr460
git checkout pr460
mvn clean package
mkdir test_hipo
cd test_hipo/
ln -s /volatile/clas12/rg-l/production/p0v9/mon/recon/022829/ .
./bin/qtl-histogram -d test_pr460 --rundir test_hipo
./slurm/scripts/detectors.test_pr460.22829.sh
./bin/qtl-analysis -d test_pr460 --custom-pub -p ./test_pr460 --overwrite

  ================================================================
  OUTPUT AND ERROR LOGS:
  /lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/*.out
  /lustre24/expphy/volatile/clas12/sangbaek/clas12-timeline-pr460/outfiles/test_pr460/log/*.err

All jobs exitted normally
Now scanning for any quieter errors, by running `grep -iE 'error:|exception:|warning'` on *.err files:
================================================================

It's good to go.

[Sangbaek]

Changes were made accordingly.
It was just the reviewer's mistake that looked at the previous version.
But, I think relaxing the condition is a good idea in general.