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Removed duplicate installation instructions from API Docs #4927
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orbeckst
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namiroues:sdg23-cleanup-api-docs
Mar 14, 2025
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ad13bd9
Removed duplicate installation instructions from API Docs
namiroues dd2feb0
Address PR review comments
namiroues 8765d11
clear index page-installation instructions in docs and address review…
namiroues 6aac733
address review comments
namiroues 9034921
Merge branch 'develop' into sdg23-cleanup-api-docs
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| Original file line number | Diff line number | Diff line change |
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@@ -61,8 +61,8 @@ members agree and adhere to --- please read it. | |
| User Guide | ||
| ========== | ||
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| The MDAnalysis `User Guide`_ provides comprehensive information on how to | ||
| use the library. We would recommend that new users have a look at the | ||
| The MDAnalysis `User Guide`_ provides comprehensive information on how to `install <https://userguide.mdanalysis.org/stable/installation.html>`_ | ||
| and use the library. We would recommend that new users have a look at the | ||
| `Quick Start Guide`_. The User Guide also has a set of `examples`_ on how to | ||
| use the MDAnalysis library which may be of interest. | ||
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@@ -73,69 +73,6 @@ use the MDAnalysis library which may be of interest. | |
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| .. _installation-instructions: | ||
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| Installing MDAnalysis | ||
| ===================== | ||
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namiroues marked this conversation as resolved.
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| The easiest approach to `install the latest release`_ is to use a package that | ||
| can be installed either with conda_ or pip_. | ||
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| conda | ||
| ----- | ||
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| First installation with conda_: | ||
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| .. code-block:: bash | ||
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| conda config --add channels conda-forge | ||
| conda install mdanalysis | ||
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| which will automatically install a *full set of dependencies*. | ||
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| To upgrade later: | ||
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| .. code-block:: bash | ||
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| conda update mdanalysis | ||
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| pip | ||
| --- | ||
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| Installation with `pip`_ and a *minimal set of dependencies*: | ||
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| .. code-block:: bash | ||
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| pip install --upgrade MDAnalysis | ||
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| To install with a *full set of dependencies* (which includes everything needed | ||
| for :mod:`MDAnalysis.analysis`), add the ``[analysis]`` tag: | ||
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| .. code-block:: bash | ||
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| pip install --upgrade MDAnalysis[analysis] | ||
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| Tests | ||
| ----- | ||
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| If you want to `run the tests`_ or use example files to follow some of the | ||
| examples in the documentation or the tutorials_, also install the | ||
| ``MDAnalysisTests`` package: | ||
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| .. code-block:: bash | ||
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| conda install mdanalysistests # with conda | ||
| pip install --upgrade MDAnalysisTests # with pip | ||
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| .. _install the latest release: | ||
| https://userguide.mdanalysis.org/stable/installation.html#installation | ||
| .. _pip: | ||
| http://www.pip-installer.org/en/latest/index.html | ||
| .. _conda: | ||
| http://conda.pydata.org/docs/ | ||
| .. _run the tests: https://github.com/MDAnalysis/mdanalysis/wiki/UnitTests | ||
| .. _tutorials: https://www.mdanalysis.org/pages/learning_MDAnalysis/ | ||
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| Source Code | ||
| =========== | ||
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@@ -185,7 +122,7 @@ Thank you! | |
| .. toctree:: | ||
| :maxdepth: 4 | ||
| :caption: Documentation | ||
| :numbered: | ||
| :numbered: | ||
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Member
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. extra space, delete |
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| :hidden: | ||
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| ./documentation_pages/overview | ||
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@@ -214,3 +151,4 @@ Indices and tables | |
| * :ref:`genindex` | ||
| * :ref:`modindex` | ||
| * :ref:`search` | ||
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