Ml project

.ls-lint.yml

@@ -4,14 +4,20 @@ ls:
   .md: snake_case | regex:[0-9A-Z\-]+
   .txt: snake_case | kebab-case
   .yml: snake_case | kebab-case
+  .ipynb: snake_case
+  .csv: snake_case
+  .py: snake_case
 
 ignore:
   - .git
   - .github
   - .vscode
-  - venv
   - .ruff_cache
   - .pytest_cache
   - __pycache__
-  - .ls-lint.yml
-  - .markdownlint.yml
+  - .venv
+  - **/site-packages/**
+  - 1_datasets
+  - data
+  - dist
+  - build

.venv/bin/get_gprof

@@ -0,0 +1,75 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+#
+# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
+# Copyright (c) 2008-2016 California Institute of Technology.
+# Copyright (c) 2016-2025 The Uncertainty Quantification Foundation.
+# License: 3-clause BSD.  The full license text is available at:
+#  - https://github.com/uqfoundation/dill/blob/master/LICENSE
+'''
+build profile graph for the given instance
+
+running:
+  $ get_gprof <args> <instance>
+
+executes:
+  gprof2dot -f pstats <args> <type>.prof | dot -Tpng -o <type>.call.png
+
+where:
+  <args> are arguments for gprof2dot, such as "-n 5 -e 5"
+  <instance> is code to create the instance to profile
+  <type> is the class of the instance (i.e. type(instance))
+
+For example:
+  $ get_gprof -n 5 -e 1 "import numpy; numpy.array([1,2])"
+
+will create 'ndarray.call.png' with the profile graph for numpy.array([1,2]),
+where '-n 5' eliminates nodes below 5% threshold, similarly '-e 1' eliminates
+edges below 1% threshold
+'''
+
+if __name__ == "__main__":
+    import sys
+    if len(sys.argv) < 2:
+        print ("Please provide an object instance (e.g. 'import math; math.pi')")
+        sys.exit()
+    # grab args for gprof2dot
+    args = sys.argv[1:-1]
+    args = ' '.join(args)
+    # last arg builds the object
+    obj = sys.argv[-1]
+    obj = obj.split(';')
+    # multi-line prep for generating an instance
+    for line in obj[:-1]:
+        exec(line)
+    # one-line generation of an instance
+    try:
+        obj = eval(obj[-1])
+    except Exception:
+        print ("Error processing object instance")
+        sys.exit()
+
+    # get object 'name'
+    objtype = type(obj)
+    name = getattr(objtype, '__name__', getattr(objtype, '__class__', objtype))
+
+    # profile dumping an object
+    import dill
+    import os
+    import cProfile
+    #name = os.path.splitext(os.path.basename(__file__))[0]
+    cProfile.run("dill.dumps(obj)", filename="%s.prof" % name)
+    msg = "gprof2dot -f pstats %s %s.prof | dot -Tpng -o %s.call.png" % (args, name, name)
+    try:
+        res = os.system(msg)
+    except Exception:
+        print ("Please verify install of 'gprof2dot' to view profile graphs")
+    if res:
+        print ("Please verify install of 'gprof2dot' to view profile graphs")
+
+    # get stats
+    f_prof = "%s.prof" % name
+    import pstats
+    stats = pstats.Stats(f_prof, stream=sys.stdout)
+    stats.strip_dirs().sort_stats('cumtime')
+    stats.print_stats(20) #XXX: save to file instead of print top 20?
+    os.remove(f_prof)

.venv/bin/get_objgraph

@@ -0,0 +1,54 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+#
+# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
+# Copyright (c) 2008-2016 California Institute of Technology.
+# Copyright (c) 2016-2025 The Uncertainty Quantification Foundation.
+# License: 3-clause BSD.  The full license text is available at:
+#  - https://github.com/uqfoundation/dill/blob/master/LICENSE
+"""
+display the reference paths for objects in ``dill.types`` or a .pkl file
+
+Notes:
+    the generated image is useful in showing the pointer references in
+    objects that are or can be pickled.  Any object in ``dill.objects``
+    listed in ``dill.load_types(picklable=True, unpicklable=True)`` works.
+
+Examples::
+
+    $ get_objgraph ArrayType
+    Image generated as ArrayType.png
+"""
+
+import dill as pickle
+#pickle.debug.trace(True)
+#import pickle
+
+# get all objects for testing
+from dill import load_types
+load_types(pickleable=True,unpickleable=True)
+from dill import objects
+
+if __name__ == "__main__":
+    import sys
+    if len(sys.argv) != 2:
+        print ("Please provide exactly one file or type name (e.g. 'IntType')")
+        msg = "\n"
+        for objtype in list(objects.keys())[:40]:
+            msg += objtype + ', '
+        print (msg + "...")
+    else:
+        objtype = str(sys.argv[-1])
+        try:
+            obj = objects[objtype]
+        except KeyError:
+            obj = pickle.load(open(objtype,'rb'))
+            import os
+            objtype = os.path.splitext(objtype)[0]
+        try:
+            import objgraph
+            objgraph.show_refs(obj, filename=objtype+'.png')
+        except ImportError:
+            print ("Please install 'objgraph' to view object graphs")
+
+
+# EOF

.venv/bin/isort

@@ -0,0 +1,7 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+import sys
+from isort.main import main
+if __name__ == '__main__':
+    if sys.argv[0].endswith('.exe'):
+        sys.argv[0] = sys.argv[0][:-4]
+    sys.exit(main())

.venv/bin/isort-identify-imports

@@ -0,0 +1,7 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+import sys
+from isort.main import identify_imports_main
+if __name__ == '__main__':
+    if sys.argv[0].endswith('.exe'):
+        sys.argv[0] = sys.argv[0][:-4]
+    sys.exit(identify_imports_main())

.venv/bin/pylint

@@ -0,0 +1,7 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+import sys
+from pylint import run_pylint
+if __name__ == '__main__':
+    if sys.argv[0].endswith('.exe'):
+        sys.argv[0] = sys.argv[0][:-4]
+    sys.exit(run_pylint())

.venv/bin/pylint-config

@@ -0,0 +1,7 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+import sys
+from pylint import _run_pylint_config
+if __name__ == '__main__':
+    if sys.argv[0].endswith('.exe'):
+        sys.argv[0] = sys.argv[0][:-4]
+    sys.exit(_run_pylint_config())

.venv/bin/pyreverse

@@ -0,0 +1,7 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+import sys
+from pylint import run_pyreverse
+if __name__ == '__main__':
+    if sys.argv[0].endswith('.exe'):
+        sys.argv[0] = sys.argv[0][:-4]
+    sys.exit(run_pyreverse())

.venv/bin/symilar

@@ -0,0 +1,7 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+import sys
+from pylint import run_symilar
+if __name__ == '__main__':
+    if sys.argv[0].endswith('.exe'):
+        sys.argv[0] = sys.argv[0][:-4]
+    sys.exit(run_symilar())

.venv/bin/undill

@@ -0,0 +1,22 @@
+#!/home/clif_lastrophysicien/ELO2_LAPERLE_HT/.venv/bin/python3
+#
+# Author: Mike McKerns (mmckerns @caltech and @uqfoundation)
+# Copyright (c) 2008-2016 California Institute of Technology.
+# Copyright (c) 2016-2025 The Uncertainty Quantification Foundation.
+# License: 3-clause BSD.  The full license text is available at:
+#  - https://github.com/uqfoundation/dill/blob/master/LICENSE
+"""
+unpickle the contents of a pickled object file
+
+Examples::
+
+    $ undill hello.pkl
+    ['hello', 'world']
+"""
+
+if __name__ == '__main__':
+    import sys
+    import dill
+    for file in sys.argv[1:]:
+        print (dill.load(open(file,'rb')))
+

.venv/lib/python3.10/site-packages/astroid-4.0.2.dist-info/INSTALLER

@@ -0,0 +1 @@
+pip

.venv/lib/python3.10/site-packages/astroid-4.0.2.dist-info/METADATA

@@ -0,0 +1,122 @@
+Metadata-Version: 2.4
+Name: astroid
+Version: 4.0.2
+Summary: An abstract syntax tree for Python with inference support.
+License-Expression: LGPL-2.1-or-later
+Project-URL: Bug tracker, https://github.com/pylint-dev/astroid/issues
+Project-URL: Discord server, https://discord.gg/Egy6P8AMB5
+Project-URL: Docs, https://pylint.readthedocs.io/projects/astroid/en/latest/
+Project-URL: Source Code, https://github.com/pylint-dev/astroid
+Keywords: abstract syntax tree,python,static code analysis
+Classifier: Development Status :: 6 - Mature
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Developers
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Programming Language :: Python :: Implementation :: PyPy
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Topic :: Software Development :: Quality Assurance
+Classifier: Topic :: Software Development :: Testing
+Requires-Python: >=3.10.0
+Description-Content-Type: text/x-rst
+License-File: LICENSE
+License-File: CONTRIBUTORS.txt
+Requires-Dist: typing-extensions>=4; python_version < "3.11"
+Dynamic: license-file
+
+Astroid
+=======
+
+.. image:: https://codecov.io/gh/pylint-dev/astroid/branch/main/graph/badge.svg?token=Buxy4WptLb
+    :target: https://codecov.io/gh/pylint-dev/astroid
+    :alt: Coverage badge from codecov
+
+.. image:: https://readthedocs.org/projects/astroid/badge/?version=latest
+    :target: http://astroid.readthedocs.io/en/latest/?badge=latest
+    :alt: Documentation Status
+
+.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
+    :target: https://github.com/ambv/black
+
+.. image:: https://results.pre-commit.ci/badge/github/pylint-dev/astroid/main.svg
+   :target: https://results.pre-commit.ci/latest/github/pylint-dev/astroid/main
+   :alt: pre-commit.ci status
+
+.. |tidelift_logo| image:: https://raw.githubusercontent.com/pylint-dev/astroid/main/doc/media/Tidelift_Logos_RGB_Tidelift_Shorthand_On-White.png
+   :width: 200
+   :alt: Tidelift
+
+.. list-table::
+   :widths: 10 100
+
+   * - |tidelift_logo|
+     - Professional support for astroid is available as part of the
+       `Tidelift Subscription`_.  Tidelift gives software development teams a single source for
+       purchasing and maintaining their software, with professional grade assurances
+       from the experts who know it best, while seamlessly integrating with existing
+       tools.
+
+.. _Tidelift Subscription: https://tidelift.com/subscription/pkg/pypi-astroid?utm_source=pypi-astroid&utm_medium=referral&utm_campaign=readme
+
+
+
+What's this?
+------------
+
+The aim of this module is to provide a common base representation of
+python source code. It is currently the library powering pylint's capabilities.
+
+It provides a compatible representation which comes from the `_ast`
+module.  It rebuilds the tree generated by the builtin _ast module by
+recursively walking down the AST and building an extended ast. The new
+node classes have additional methods and attributes for different
+usages. They include some support for static inference and local name
+scopes. Furthermore, astroid can also build partial trees by inspecting living
+objects.
+
+
+Installation
+------------
+
+Extract the tarball, jump into the created directory and run::
+
+    pip install .
+
+
+If you want to do an editable installation, you can run::
+
+    pip install -e .
+
+
+If you have any questions, please mail the code-quality@python.org
+mailing list for support. See
+http://mail.python.org/mailman/listinfo/code-quality for subscription
+information and archives.
+
+Documentation
+-------------
+http://astroid.readthedocs.io/en/latest/
+
+
+Python Versions
+---------------
+
+astroid 2.0 is currently available for Python 3 only. If you want Python 2
+support, use an older version of astroid (though note that these versions
+are no longer supported).
+
+Test
+----
+
+Tests are in the 'test' subdirectory. To launch the whole tests suite, you can use
+either `tox` or `pytest`::
+
+    tox
+    pytest