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Redirect NCBITaxon PURLs to official NCBI site #1066

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Merged
jamesaoverton merged 1 commit into from
Dec 12, 2025
+9 −1
Merged

Redirect NCBITaxon PURLs to official NCBI site #1066

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2 changes: 1 addition & 1 deletion config/ncbitaxon.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ products:
- ncbitaxon.obo.gz: https://github.com/obophenotype/ncbitaxon/releases/latest/download/ncbitaxon.obo.gz
- ncbitaxon.json.gz: https://github.com/obophenotype/ncbitaxon/releases/latest/download/ncbitaxon.json.gz

term_browser: ontobee
term_browser: custom
example_terms:
- NCBITaxon_1

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8 changes: 8 additions & 0 deletions config/obo.yml
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Expand Up @@ -88,6 +88,14 @@ entries:
- from: /HAO_0000000
to: http://api.hymao.org/api/ontology/ontology_class/HAO_0000000

# Term redirects for NCBI Taxonomy
- regex: ^/obo/NCBITaxon_(\d+)$
replacement: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=$1
status: see other
tests:
- from: /NCBITaxon_9606
to: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=9606

# Term redirects for PR
# Match digits or UniProt ID, see http://www.uniprot.org/help/accession_numbers
- regex: ^/obo/PR_(\d+|[OPQ][0-9][A-Z0-9]{3}[0-9](-\d+)?|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}(-\d+)?)$
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