Single-cell profiling of BAL in preschool cystic fibrosis reveals macrophage dysregulation and ivacaftor-modified inflammatory programs in the early life lung

This repository contains code and output for the analysis described in the manuscript: "Single-cell profiling of BAL in preschool cystic fibrosis reveals macrophage dysregulation and ivacaftor-modified inflammatory programs in the early life lung".

The raw single cell RNA-seq and CITE-seq count data generated for this study can be accessed at:

The code and analysis results can be viewed at the analysis webpage. To reproduce the complete analysis follow the instructions on the getting started page.

The code in this analysis is covered by the MIT license and the written content is covered by a Creative Commons CC-BY 4.0 license.

The associated publication and the data sets used are covered by their respective licenses and usage agreements. Please refer to those sources for details. A workflowr project.