When running
amdirt download -t ancientmetagenome-hostassociated -y libraries --output data/amdirt/
with amdirt, version 1.6.5
While I get the message amdirt [INFO]: Downloading ancientmetagenome-hostassociated libraries table from v25.03.0 release, saving to data/amdirt//ancientmetagenome-hostassociated_libraries_v25.03.0.tsv
The data is not actually saved there, but just in . (i.e., where I ran the command in).
I have a feeling that this is because possibly . is hardcoded in the function on this line:
|
def download(table: str, table_type: str, release: str, output: str = ".") -> str: |
? bt I'm not 100% sure
When running
with
amdirt, version 1.6.5While I get the message
amdirt [INFO]: Downloading ancientmetagenome-hostassociated libraries table from v25.03.0 release, saving to data/amdirt//ancientmetagenome-hostassociated_libraries_v25.03.0.tsvThe data is not actually saved there, but just in
.(i.e., where I ran the command in).I have a feeling that this is because possibly
.is hardcoded in the function on this line:amdirt/amdirt/download/__init__.py
Line 10 in f53816e