Antonio Valentino (1): Fix HDF5_ZLIB check Bart Oldeman (1): Add HAVE_MPI_INFO_F2C to cmake config.h input file Brian McKenna (1): parse projection functions Dan Ibanez (3): Ensure MPI header found without wrapper more missing includes for MPI without wrapper HAVE_MPI_INFO_F2C was missing from CMake config.h Dave Allured (1): Update RELEASE_NOTES.md Dave-Allured (1): Fix time zone parser bug, github #1417 Dennis Heimbigner (134): Fix reclamation of the ->format_XXX_info fields force github checks restart Fix missing forward declarations Update RELEASE_NOTES.md Use proper CURLOPT values for VERIFYHOST and VERIFYPEER Support no-op dispatch functions Update release notes ckp updae updae updae Allow redefinition of variable filters uintptr for VS Fix ncgen handling of big data sections make ncdumpchunks conditional handle missing H5Dread_chunks ocdebug restore Expanded RELEASE_NOTES description Fix undefined references when using Visual Studio Make plugin noop1 be distcleaned Condition XGetOpt on MSC_VER not WIN32 Fix some protocol differences between netcdf-c and the Hyrax server. Fix windows \r problem Add more dap4 tests for CMake Make CMake tests work for dap4 Fix some memleaks in libdap4 Allow use of type keywords as identifier in formats that do not support that type. Fix nccopy chunking to use default chunking Update release notes This PR adds EXPERIMENTAL support for accessing data in the Fix LGTM detected errors Fix LGTM errors Fix LGTM errors and S3 mis-configuration Semi-disable S3 tests. turn on some tests Fixed documentation externl'ize missinginclude Fix nczarr-experimental to better support CMake and find AWS libraries Conditional malloc.h on Windows Move closer to getting S3 support work with CMake under Visual Update parser/lexer build process for ncgen3 Malformed CMake CMake fixes Fix items in netcdf_meta.h Define isnan and isinf for OSX Disable all USE_PARALLEL code in libnczarr cleanup some LOOK code The big change for this commit is complete the Fix nccopy -c dim/x to actually use the dim/x value. Fix URL encoding in DAP2 url processing Fix error where not converting fill data force check retry Fix issue 1839 -- missing symbols under OSX Use the built-in HDF5 byte-range reader, if available. Mostly revert the filter code to reduce its complexity of use. Slight mod to the incompatibilities section Revise filters.md to clarify Fix missing casts of var->filters Cleanup byterange test URLS Prepare for the path management code Improve the building of NCZARR S3 support in CMake and Autoconf Update Release Notes Support aligned access for selected Arm processors. Revise the arm test per Unidata/netcdf-c#1854 (comment) Suppress notused warnings Yet another fix for DAP2 double URL encoding. Add encode= tests Remove trailing comma from _NCProperties attribute value. Provide a Number of fixes/improvements to NCZarr Update RELEASENOTES Force re-check Fix a number of CMake problems missing ifdef Create c-cpp.yml actions1 remove bm_chunks3 remove nczarr_test/bm* revert Remove some file references in nczarr_test/Makefile.am remove actions file remove actions file Enforce that !ENABLE_BYTERANGE => !ENABLE_HDF5_ROS3 Fix merge error from PR https://github.com/Unidata/netcdf-c/pull/1892/files Fix minor Makefile.am warning manual workflow update workflows rename automake-dmh.yml ignore.yml manual.yml ignore update file permission opendap2.oceanbrowser.net is temporarily unavailable remove worflows and fix ifdef unblock .dmh unblock dmh appveyor Make use of clock_gettime be conditional. Additional Fixes to NCZarr Update Release Notes Remove some potentially harmful duplicate code Fix some additional edges cases for mapping slices to chunks retry2 debug update workflows update-workflows-again rebuild Add tests for filter order on read and write cases Fix CMake bug undebug workflow Enable selected DAP tests previously disabled. More NCZarr optimizations remove lgtm alert Make fillmismatch the default for DAP2 and DAP4 fix tst_fillmismatch.sh fix test cases Improve operation of the DAP4 code and fix bugs turn off actions on push Forgot baselinehyrax in the dist Enable nczarr testing in github actions. disable run_chunkcases Add zip file support appveyor fix More fixes to the nccopy filter x chunking algorithm Unify definition of NC_DISPATCH_VERSION Fix duplicate BOOL definitions Update Release Notes FIx install of netcdf_dispatch.h Update RELEASE_NOTES Update RELEASE_NOTES Fix memory leak in nccopy.c Codify cross-platform file paths Update RELEASE_NOTES Douglas Dirks (1): Ensure that the nav-tree extends to the full height of the content area. The footer must be enclosed in a div element with the id="nav-path" for this to work. Edward Hartnett (97): now testing that nc_inq_var_deflate() works for all formats and returns 0 deflate and deflate_level updated release notes dealing with nc_inq_var_szip(), testing, and release notes documentation improvements documentation improvements documentation improvements now testing nc_inq_var_deflate/nc_inq_var_szip after enddef too cleanup checking nc_inq_var_chunking() with classic formats more testing after enddef whitespace cleanup of test added demonstration of nc_def_var_deflate() issue adding internal function, plus some documentation now properly setting HDF5 file cache for files created/opened sequentially on parallel IO builds updated RELEASE_NOTES whitespace cleanup updated RELEASE_NOTES fixed LDFLAFS in plugins Makefile.am, also fixed warning in tst_h_vars.c changed to only MOSTLY dead changed back to totally dead readded NOTNC3 varm functions to dispatch fixed the setting of AM_LDFLAGS added tst_gfs_data1 starting to modify test starting to modify test starting to develop test more test development more test development further test development further test development more test development further test development more test development more test development more test development now reopening file and checking dim and var metadata now checking pfull data now checking more data now checking more data now checking more data fixed warnings in tst_create_files.c fixed warnings in bm_file.c further benchmark development, moved to benchmark dir better handling for multiple data vars further test development more benchmark development for tst_gfs_data_1.c fixed Makefile to refrain from building nc_perf/tst_gfs_data_1 for non-parallel builds move data decomposition calculations to decomp_4D() function further development now create metadata in a function with many parameters added attributes added attributes more benchmark development starting to add decomp for 36 tasks starting to add test for unlimited dim fixed problem setting szip on var with unlimited dim and added test updated RELEASE_NOTES added some ncdump tests for szip when it is present added test cdl files to cleanfiles cleanup of 2d decomposition working on 2D decomposition code code cleanup cleaned up lat/lon code cleaned up grid code dealing with coord var cleanup added new metadata writing function starting to check metadata more checking metadata now checking some coord vars more checking of metadata and coord vars starting to use get_vara functions to check metadata further checking of metadata further checking of metadata now checking lat/lon coord values changed output to be more readable updated RELEASE_NOTES updated RELEASE_NOTES starting to test repeated redefs now dont return error on second redef call for netcdf/HDF5 files updated release notes fixed warning in hdf5filter.c added new test tst_h_par_compress.c fixed warning in tst_parallel5.c changed tst_h_par_compress to use H5Dcreate2() just like code in nc4hdf5.c does adding property list for dataset creation to tst_h_par_compress.c adding other settings of dataset property list to match what is in nc4hdf5.c turned off szip testing while HDF5 issue is resolved took out timing code added tst_h_par_compress to CMake build updated RELEASE_NOTES getting tst_gfs_data_1 ready to merge fixed dispatch version number in CMakeLists.txt fixed tst_h_par_compress.c adding test for attributes fixed up test fixed comment fixed comment Greg Sjaardema (14): Proof-of-Concept: Avoid N^2 behavior in NC4_inq_dim Remove line that was missed in original patch Different method of setting Parallel Filters variables Remove duplicate references to error4.c Fix CMake generation of netcdf_meta.h Avoid potential integer overrun Remove test since file was moved to nc_perf Protect use of `H5Dread_chunk` function Fix setting of use_szlib Fix undefined struct member access Fix CMake build so netcdf_meta.h has correct form Fix detection and use of SZIP library Fix so setting of NC_FORMATX_NC3 in parallel is kept Fix if statement to apply to fflush John Correira (1): Fix typo postinstall. Jorge López Fueyo (1): Fix build on Windows with clang-cl LProx2020 (6): Update FAQ.md Updated README.md Links Copyediting Updates #1 Copyediting Updates #2 Update software.html Email Removal Magnus Ulimoen (4): Generate m4 files out of tree Configure netcdf_meta.h directly to BINARY_DIR Move generated file to BINARY_DIR H5Znoop1.c copied to BINARY_DIR instead of SOURCE_DIR Mark Hansen (1): Correcting dead link to installation Orion Poplawski (1): Fix wrong header include in testing HDF5 for zlib Peter Hill (1): Fix wrong header include in testing HDF5 for zlib Rostislav Kouznetsov (1): Fix for :60 seconds in ncdump Ryan May (2): Fix for cURL >7.69 Add fix to release notes. Scot Breitenfeld (14): Updated to use H5O_info2_t for HDF5 1.12 and the use of H5Oget_info3 instead of H5Gget_objinfo fixed missing declaration Replaced deprecated (in 1.8.0) H5Aopen_name with H5Aopen_by_name fixed H5O_info_t incompatiblity with H5Oget_info_by_idx3 Allow for the HDF5 file format to be compatible with features greater than HDF5 1.8, which reverted past fix Allow for the HDF5 file format to be compatible with features greater fixed #def fixed syntax removed the use of H5_VERSION_LT Updated the superblock value for reference ncdumps reverted changes superblock values updated ncdump scripts to handle different versions of superblock values removed the check for H5Pset_libver_bounds (HAVE_H5PSET_LIBVER_BOUNDS) since API Sean Arms (6): Test ncdump time unit name case-insensitivity Treat time units as case-insensitive in ncdump Define strncasecmp as _strnicmp on Windows Update links to netCDF-java documentation. Update links Update d4ts.war and dts.war build instructions Shreyas Ananthan (1): Fix parallel NetCDF checks in configure.ac for spectrum MPI Tim Gates (1): docs: fix simple typo, maximim -> maximum Ward Fisher (65): Tweaked docs to fix dead references introduced as part of separating out NUG from netCDF-C. Added hard failure to script, modified cmake default. Corrected an issue with parallel filter test logic in cmake-based builds. Corrected parallel (mpi) testing on cmake builds. Correcting a formatting error for scalars when dumping with ncdump -f Updated release notes. Added a stand-alone user level doxygen configuration file. It must be used from the top-level netcdf-c directory, e.g. doxygen docs/Doxyfile.user. Added a check for m4 and throw an error if m4 isn't on the path and the generated file isn't present (as it would be in a point release). In support of Unidata/netcdf-c#1739 More m4 fenceposting. Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries" Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" Removed unneeded code on OSX. Modify isnan() operation Added nc4print utility to cmake build infrastructure. Ensured dependencies are linked against properly. Working on autoconf-based build on OSX Fixe szlib write status message for cmake-based builds. Fix logic for determining if filter tests should be run when shared builds are turned off via autotools. See Unidata/netcdf-c#1829 for more information. Corrected an accidental change. Removed NUG files, added a README.md file directing people to the correct location. Updated RELEASE_NOTES.md Updated release notes to refer to Unidata/netcdf-c#1866 Updated release notes with reference to Unidata/netcdf-c#1871 Removed duplicated release note in support of Unidata/netcdf-c#1870 Remove --no-undefined which is causing problems when compiling with -fsanitize=address -fno-omit-frame-pointer in support of Unidata/netcdf-c#1878 Modified plugins/Makefile.am to add -no-undefined as required on cygwin. Removed travis file in preparation for migration away from travis-ci and towards GitHub Actions. Restoring .travis.yml file for convienence until Github Actions are integrated, but not restoring the requirement that they pass (due to throttled Travis runs) for PR's to be merged. Adding github actions to netcdf-c for CI purposes. Address link issue on github actions platform. Correct previous 'fix' that wasn't. Explicitly link rt library for github actions. Github Action debugging. Temporarily reducing test matrix. Clean up, bring over a new action script. This one uses apt and cached builds instead of conda. Temporarily disabled encoding test under cmake Cleaned up orphaned github action files, modified GA to run on PR instead of push. Removed dangling conflict info. tweak m4 detection. Fix logic error. More tweaking. Added an apt update stanza to the github action script. Added more updates Update number of threads used in doxygen developer config file. Correct bash test failure on Windows in MSYS2 bash shell with Visual Studio-based build, in support of Unidata/netcdf-c#1940 More modification in support of #1940 Fix tst_filter.sh such that it returns an error immediately on failure. Restored cleanup stanza in tst_filter.sh Address a C99 forward-declaration issue. Updated SO version in preparation for public release. Updated SO version in cmakelists.txt in preparation for the 4.8.0 release. Bumped version numbers to next development version. Updated release version string. Preparing to bundle in portable autoconf-generated files. Adding in portable autconf-generated files. Added additional generated files for deployment. Added check for H5Literate in support of Unidata/netcdf-c#1965 Amend check for H5Literate to work with 1.10.x Added check for H5Literate symbol (hdf5 1.8.x, 1.10.x) or macro (1.12.x)) in support of Unidata/netcdf-c#1965 Updated expected release date. Added 1.0.1 to test matrix in support of Unidata/netcdf-c#1931 (comment) Corrected release date in preparation for today's release. Updated doxyfile to include libnczarr/zarr.c, also removed references to files that have been removed. Corrected typo preventing success when running make dist or make distcheck Update refactored and regenerated files. Wojciech Śmigaj (1): Fix name of the HDF5_C_LIBRARY_hdf5 CMake variable bombipappoo (4): Fix incorrect keywords. Correct destination buffer size to strlcat Convert filename from ANSI to UTF-8 before calling HDF5. Fix format buffer size neok-m4700 (1): Fix build bug in debug mode

4.8.0 prep branch fails to build when linking against hdf5 1.12.0 #1965

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