Estimates probabilities and expected numbers of mutations in the tumor genome based on observed mutation frequencies.
variantprobs depends on R package edgeR. To install edgeR, run the following commands in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("edgeR")
The easiest way to install variantprobs is via R package devtools. Run the following commands in R to install devtools, if it is not already installed:
if (!requireNamespace("devtools", quietly = TRUE))
install.packages("devtools")
Then install variantprobs as follows:
devtools::install_github("c7rishi/variantprobs")