normalize gnomad exome and genome vcf for hg19, hg38, grch37#279
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naumenko-sa wants to merge 1 commit intochapmanb:masterfrom
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normalize gnomad exome and genome vcf for hg19, hg38, grch37#279naumenko-sa wants to merge 1 commit intochapmanb:masterfrom
naumenko-sa wants to merge 1 commit intochapmanb:masterfrom
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found a bug - will push a new one |
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When vcf's from gnomad exome/genome are installed, they need to be normalized, otherwise later vcfanno is not able to match some indels and annotates high frequency indels with low frequency in general population. Solves bcbio/bcbio-nextgen#2503